MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.5 nTPM
HPA Brain:88.6 nTPM
GTEx:67.5 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:81.2 nTPM
Mouse:58.1 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.6
2586 Male, age 75, left hemisphere 116.7
2828 Female, age 72, unknown 87.6
1827 Male, age 72, unknown 85.1
2411 Female, age 72, unknown 83.3
1870 Female, age 42, unknown 82.7
2219 Male, age 76, both hemispheres 71.2
1833 Male, age 53, unknown 67.4
2666 Male, age 74, left hemisphere 65.4
2019 Male, age 18, unknown 63.8
1830 Male, age 51, unknown 63.1
Dorsal raphe nucleus
nTPM: 83.7
2298 Female, age 72, unknown 97.4
2016 Female, age 72, unknown 85.7
2047 Male, age 72, unknown 82.9
1828 Male, age 53, unknown 79.6
2750 Male, age 76, both hemispheres 73.2
Inferior colliculus
nTPM: 71.2
2097 Female, age 72, unknown 82.7
1890 Male, age 53, unknown 71.4
1848 Female, age 42, unknown 69.2
2849 Male, age 72, unknown 61.4
Median raphe nucleus
nTPM: 66.2
2220 Male, age 76, midline 66.2
Periaquaductal grey, anterior
nTPM: 88.6
1947 Male, age 18, unknown 93.0
2502 Female, age 75, unknown 87.9
1795 Male, age 51, unknown 84.8
Periaquaductal grey, dorsal
nTPM: 68.3
1840 Male, age 53, unknown 72.8
2464 Female, age 72, unknown 70.7
1831 Male, age 72, unknown 65.8
2850 Male, age 76, both hemispheres 63.8
Periaquaductal grey, lateral
nTPM: 64.0
2053 Male, age 18, unknown 79.4
2140 Male, age 76, both hemispheres 62.3
2272 Male, age 74, both hemispheres 50.3
Pretectal area
nTPM: 76.5
2667 Female, age 75, unknown 98.4
1816 Male, age 51, unknown 83.1
1815 Male, age 53, unknown 82.4
2224 Female, age 72, unknown 78.0
2316 Male, age 76, right hemisphere 77.6
2825 Male, age 18, unknown 74.3
2007 Male, age 72, unknown 72.6
1817 Female, age 42, unknown 72.1
2273 Male, age 74, both hemispheres 68.3
1944 Female, age 72, unknown 68.0
2407 Male, age 75, both hemispheres 66.7
Red nucleus
nTPM: 82.5
1821 Female, age 72, unknown 106.3
2503 Female, age 72, unknown 92.7
2769 Male, age 72, unknown 87.1
1904 Male, age 53, unknown 85.3
1954 Female, age 42, unknown 84.9
1865 Male, age 51, unknown 82.6
2227 Male, age 72, unknown 80.6
2588 Male, age 74, left hemisphere 79.8
2823 Male, age 76, right hemisphere 75.6
2584 Male, age 75, left hemisphere 74.9
2725 Female, age 75, unknown 70.2
2785 Male, age 18, unknown 69.8
Substantia nigra
nTPM: 85.3
1916 Female, age 42, unknown 112.0
1851 Male, age 51, unknown 102.0
2241 Male, age 72, unknown 92.1
2699 Male, age 18, unknown 88.2
1941 Male, age 53, unknown 81.3
2583 Male, age 75, right hemisphere 80.2
1889 Female, age 72, unknown 79.8
2590 Female, age 75, unknown 73.7
2409 Female, age 72, unknown 73.6
2665 Male, age 74, both hemispheres 69.8
Superior colliculus
nTPM: 78.1
2664 Male, age 75, both hemispheres 94.3
1796 Male, age 53, unknown 86.5
2261 Male, age 18, unknown 81.5
2668 Female, age 75, unknown 80.7
1913 Female, age 42, unknown 80.3
1895 Male, age 76, right hemisphere 78.2
1995 Male, age 72, unknown 77.6
1839 Male, age 51, unknown 71.5
2587 Male, age 74, left hemisphere 65.4
2087 Female, age 72, unknown 64.8
Ventral tegmental area
nTPM: 81.8
1915 Female, age 42, unknown 96.9
2410 Female, age 72, unknown 87.4
1942 Male, age 51, unknown 84.7
2218 Male, age 76, both hemispheres 76.6
2021 Male, age 53, unknown 74.8
2223 Female, age 72, unknown 70.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 67.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.5
Samples: 139

Max nTPM: 112.6
Min nTPM: 29.3
Std nTPM: 17.8
Median nTPM: 66.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 112.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 112.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 107.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 105.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 100.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 100.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 99.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 98.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 98.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 98.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 96.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 81.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.2
Samples: 4

Max nTPM: 81.1
Min nTPM: 64.2
Sample A Female 81.1
Sample B Female 64.2
Sample C Male 65.5
Sample D Male 65.9
Midbrain
nTPM: 75.8
Samples: 4

Max nTPM: 95.7
Min nTPM: 63.9
Sample A Female 95.7
Sample B Female 64.7
Sample C Male 78.9
Sample D Male 63.9
Periaqueductal gray
nTPM: 61.0
Samples: 3

Max nTPM: 68.4
Min nTPM: 53.0
Sample B Female 61.6
Sample C Male 68.4
Sample D Male 53.0
Superior colliculi
nTPM: 81.2
Samples: 4

Max nTPM: 90.4
Min nTPM: 72.1
Sample A Female 90.4
Sample B Female 89.6
Sample C Male 72.7
Sample D Male 72.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.1
Samples: 4

Max nTPM: 60.4
Min nTPM: 56.0
Sample A Male 60.4
Sample B Male 56.0
Sample C Female 56.8
Sample D Female 59.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
532571 Antisense, RP_040810_02_B05, Mouse strain C57BL/6J (56 days, male) 2.0

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