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CYB561D1
HPA
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  • CYB561D1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CYB561D1
Synonyms FLJ39035, FLJ44753
Gene descriptioni

Full gene name according to HGNC.

Cytochrome b561 family member D1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband p13.3
Chromosome location (bp) 109494052 - 109502932
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000174151 (version 109)
Entrez gene 284613
HGNC HGNC:26804
UniProt Q8N8Q1 (UniProt - Evidence at protein level)
neXtProt NX_Q8N8Q1
GeneCards CYB561D1
Antibodypedia CYB561D1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Probable transmembrane reductase that may use ascorbate as an electron donor and transfer electrons across membranes to reduce monodehydro-L-ascorbate radical and iron cations Fe(3+) in another cellular compartment.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Translocase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Electron transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Heme, Iron, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable heme binding activity and oxidoreductase activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CYB561D1-201
ENSP00000309324
ENST00000310611
Q8N8Q1
[Direct mapping] Probable transmembrane reductase CYB561D1
Show all
Enzymes
   ENZYME proteins
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005515 [protein binding]
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
GO:0020037 [heme binding]
GO:0046872 [metal ion binding]
GO:0055085 [transmembrane transport]
GO:0140571 [transmembrane ascorbate ferrireductase activity]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
133 aa
14.3 kDa
No 0
CYB561D1-202
ENSP00000358884
ENST00000369868
Q8N8Q1
[Direct mapping] Probable transmembrane reductase CYB561D1
Show all
Enzymes
   ENZYME proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
GO:0020037 [heme binding]
GO:0046872 [metal ion binding]
GO:0055085 [transmembrane transport]
GO:0140571 [transmembrane ascorbate ferrireductase activity]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
251 aa
27.7 kDa
No 6
CYB561D1-203
ENSP00000377312
ENST00000393709
Q8N8Q1
[Direct mapping] Probable transmembrane reductase CYB561D1
Show all
Enzymes
   ENZYME proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
GO:0020037 [heme binding]
GO:0046872 [metal ion binding]
GO:0055085 [transmembrane transport]
GO:0140571 [transmembrane ascorbate ferrireductase activity]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
172 aa
19.3 kDa
No 4
CYB561D1-204
ENSP00000413530
ENST00000420578
Q8N8Q1
[Direct mapping] Probable transmembrane reductase CYB561D1
Show all
Enzymes
   ENZYME proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
GO:0020037 [heme binding]
GO:0046872 [metal ion binding]
GO:0055085 [transmembrane transport]
GO:0140571 [transmembrane ascorbate ferrireductase activity]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
229 aa
25.4 kDa
No 6
CYB561D1-205
ENSP00000416898
ENST00000430195
Q8N8Q1
[Direct mapping] Probable transmembrane reductase CYB561D1
Show all
Enzymes
   ENZYME proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
GO:0020037 [heme binding]
GO:0046872 [metal ion binding]
GO:0055085 [transmembrane transport]
GO:0140571 [transmembrane ascorbate ferrireductase activity]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
128 aa
14.2 kDa
No 1
CYB561D1-206
ENSP00000435819
ENST00000496961
E9PIJ2
[Direct mapping] Ascorbate ferrireductase (transmembrane)
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
64 aa
6.9 kDa
No 1
CYB561D1-207
ENSP00000433095
ENST00000527072
E9PM70
[Direct mapping] Ascorbate ferrireductase (transmembrane)
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
55 aa
5.9 kDa
No 1
CYB561D1-208
ENSP00000434344
ENST00000528785
E9PQU0
[Direct mapping] Ascorbate ferrireductase (transmembrane)
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0140575 [transmembrane monodehydroascorbate reductase activity]
Show all
231 aa
25.6 kDa
No 6
CYB561D1-209
ENSP00000435802
ENST00000533024
E9PIK3
[Direct mapping] Probable transmembrane reductase CYB561D1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
54 aa
5.8 kDa
No 0

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