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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:659.1 nTPM
HPA Brain:166.4 nTPM
GTEx:659.1 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:451.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 61.2
2816 Male, age 47, midline 89.4
2048 Male, age 55, midline 79.6
2565 Male, age 75, midline 55.2
1981 Female, age 72, midline 54.1
2194 Female, age 79, both hemispheres 28.0
Cervical spinal cord, dorsal horn
nTPM: 166.4
2296 Male, age 66, both hemispheres 258.0
1877 Male, age 55, unknown 228.0
2721 Male, age 90, both hemispheres 159.9
2173 Female, age 72, unknown 130.5
2297 Male, age 75, both hemispheres 116.2
2069 Male, age 47, both hemispheres 105.6
Cervical spinal cord, ventral horn
nTPM: 146.3
2480 Male, age 75, both hemispheres 298.1
2295 Male, age 66, both hemispheres 200.9
2098 Female, age 72, unknown 158.6
2809 Male, age 90, both hemispheres 122.3
2820 Female, age 79, both hemispheres 52.4
2068 Male, age 55, unknown 45.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

659.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 659.1
Samples: 159

Max nTPM: 1297.9
Min nTPM: 207.1
Std nTPM: 184.4
Median nTPM: 639.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1297.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1243.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1192.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1149.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1007.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1003.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 999.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 967.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 931.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 931.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 929.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 928.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 922.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 921.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 918.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 911.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 901.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 895.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 887.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 883.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 874.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 873.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 855.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 845.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 844.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 841.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 833.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 828.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 824.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 819.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 816.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 809.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 798.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 795.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 790.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 788.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 781.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 773.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 771.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 770.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 768.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 768.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 761.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 743.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 742.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 742.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 740.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 736.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 735.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 731.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 728.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 727.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 723.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 720.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 713.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 711.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 708.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 708.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 704.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 700.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 694.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 689.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 683.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 682.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 679.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 675.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 675.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 674.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 670.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 666.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 663.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 659.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 657.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 651.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 649.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 648.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 647.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 642.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 641.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 639.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 634.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 633.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 633.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 630.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 627.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 626.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 625.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 622.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 621.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 619.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 617.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 603.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 601.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 599.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 599.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 599.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 595.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 591.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 589.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 582.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 579.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 574.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 573.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 571.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 568.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 568.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 567.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 560.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 558.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 552.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 550.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 548.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 543.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 540.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 540.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 539.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 535.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 535.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 532.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 529.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 528.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 527.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 527.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 524.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 521.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 512.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 511.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 511.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 507.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 507.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 505.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 505.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 494.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 491.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 490.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 479.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 478.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 477.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 472.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 471.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 471.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 469.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 465.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 461.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 456.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 448.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 425.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 423.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 397.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 395.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 392.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 381.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 376.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 344.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 333.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 331.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 293.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 286.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 207.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 19.9
FF:10181-103D1 60 years, female 20.6
FF:10159-103A6 76 years, female 19.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

451.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 451.9
Samples: 4

Max nTPM: 660.2
Min nTPM: 293.5
Sample A Female 293.5
Sample B Female 498.9
Sample C Male 660.2
Sample D Male 355.1
Ventral spinal cord
nTPM: 395.1
Samples: 4

Max nTPM: 438.9
Min nTPM: 320.0
Sample A Female 320.0
Sample B Female 404.1
Sample C Male 438.9
Sample D Male 417.3

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