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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:167.0 nTPM
HPA Brain:91.9 nTPM
GTEx:167.0 nTPM
FANTOM5:44.0 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:73.3 nTPM
Allen mouse:3.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.9
Sample id Sample description nTPM
Amygdala
nTPM: 46.2
2517 Female, age 94, left hemisphere 80.5
1987 Female, age 91, left hemisphere 60.3
2514 Male, age 75, right hemisphere 46.9
2814 Male, age 76, right hemisphere 25.2
2695 Female, age 67, right hemisphere 18.0
Basal amygdala
nTPM: 78.3
2827 Female, age 67, right hemisphere 110.6
2685 Female, age 94, left hemisphere 103.0
2243 Female, age 91, right hemisphere 71.6
2110 Male, age 80, left hemisphere 64.9
2609 Male, age 75, right hemisphere 63.0
1955 Male, age 76, both hemispheres 56.8
Central amygdala
nTPM: 72.8
2826 Female, age 94, left hemisphere 183.7
2515 Male, age 75, right hemisphere 54.2
2239 Male, age 80, left hemisphere 54.1
2701 Female, age 91, right hemisphere 45.8
1905 Male, age 76, both hemispheres 26.0
Corticomedial amygdala
nTPM: 63.6
2829 Male, age 80, left hemisphere 85.5
2535 Female, age 67, right hemisphere 79.7
2429 Female, age 94, left hemisphere 67.1
2242 Female, age 91, right hemisphere 61.1
2428 Male, age 75, right hemisphere 59.4
2240 Male, age 76, both hemispheres 28.7
Lateral amygdala
nTPM: 91.9
2534 Female, age 94, left hemisphere 194.0
2256 Male, age 80, left hemisphere 121.8
2830 Female, age 67, right hemisphere 69.3
2516 Male, age 75, right hemisphere 65.5
2255 Female, age 91, right hemisphere 53.2
1883 Male, age 76, both hemispheres 47.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 167.0
Samples: 152

Max nTPM: 566.8
Min nTPM: 4.9
Std nTPM: 103.0
Median nTPM: 147.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 566.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 561.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 515.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 509.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 450.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 425.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 396.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 365.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 346.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 338.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 327.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 321.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 319.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 305.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 304.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 291.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 288.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 285.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 274.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 268.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 266.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 263.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 261.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 260.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 256.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 253.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 251.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 248.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 238.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 231.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 226.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 224.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 221.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 217.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 213.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 211.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 211.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 207.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 199.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 196.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 194.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 191.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 190.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 188.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 185.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 183.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 175.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 175.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 174.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 171.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 171.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 171.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 171.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 170.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 168.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 167.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 167.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 167.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 167.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 166.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 165.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 162.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 162.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 161.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 161.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 161.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 160.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 160.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 160.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 157.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 155.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 154.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 152.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 151.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 150.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 144.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 141.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 140.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 139.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 138.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 137.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 137.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 134.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 134.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 132.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 132.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 129.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 128.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 127.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 126.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 120.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 120.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 119.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 118.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 117.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 116.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 115.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 114.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 113.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 112.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 112.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 110.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 110.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 109.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 108.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 106.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 104.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 100.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 99.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 95.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 93.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 93.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 87.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 83.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 83.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 82.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 79.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 77.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 75.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 73.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 72.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 69.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 67.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 65.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 64.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 58.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 57.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 57.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 53.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 53.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 53.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 51.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 51.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 47.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 44.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 42.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 35.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 33.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 33.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 29.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 44.0
FF:10151-102I7 76 years, female 44.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.3
Pig sample Sample description nTPM
Amygdala
nTPM: 17.4
Samples: 4

Max nTPM: 20.1
Min nTPM: 12.6
Sample A Female 20.1
Sample B Female 19.7
Sample C Male 17.0
Sample D Male 12.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 73.3
Samples: 4

Max nTPM: 95.0
Min nTPM: 63.6
Sample A Male 63.6
Sample B Male 69.0
Sample C Female 95.0
Sample D Female 65.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.5
71249081 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 3.5
69407379 Antisense, RP_050414_01_E08, Mouse strain C57BL/6J (56 days, male) 1.9

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