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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:796.9 nTPM
HPA Brain:912.8 nTPM
GTEx:796.9 nTPM
FANTOM5:63.4 Scaled Tags Per Million
Pig:313.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

912.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 696.2
2565 Male, age 75, midline 902.4
1981 Female, age 72, midline 819.9
2048 Male, age 55, midline 598.5
2194 Female, age 79, both hemispheres 593.0
2816 Male, age 47, midline 567.0
Cervical spinal cord, dorsal horn
nTPM: 727.8
2069 Male, age 47, both hemispheres 885.3
2173 Female, age 72, unknown 866.4
2296 Male, age 66, both hemispheres 801.3
1877 Male, age 55, unknown 708.6
2297 Male, age 75, both hemispheres 582.6
2721 Male, age 90, both hemispheres 522.9
Cervical spinal cord, ventral horn
nTPM: 912.8
2480 Male, age 75, both hemispheres 1387.1
2809 Male, age 90, both hemispheres 1063.2
2098 Female, age 72, unknown 933.4
2295 Male, age 66, both hemispheres 876.2
2068 Male, age 55, unknown 730.3
2820 Female, age 79, both hemispheres 486.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

796.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 796.9
Samples: 159

Max nTPM: 1534.9
Min nTPM: 478.8
Std nTPM: 175.5
Median nTPM: 775.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1534.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1340.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1274.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1172.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1152.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1151.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1138.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1133.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1110.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1105.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1099.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1067.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1054.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1052.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1030.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1016.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1014.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 993.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 985.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 975.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 971.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 970.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 960.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 960.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 953.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 953.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 950.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 943.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 942.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 941.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 939.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 936.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 936.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 933.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 932.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 925.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 923.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 923.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 923.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 922.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 900.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 890.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 883.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 879.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 876.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 873.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 869.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 867.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 864.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 863.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 863.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 861.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 861.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 857.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 853.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 852.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 852.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 848.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 847.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 846.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 840.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 825.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 818.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 816.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 809.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 806.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 806.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 806.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 802.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 798.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 794.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 790.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 790.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 788.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 787.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 782.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 781.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 778.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 777.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 775.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 773.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 764.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 763.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 763.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 757.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 756.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 753.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 753.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 753.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 740.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 739.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 738.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 736.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 736.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 733.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 732.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 732.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 731.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 730.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 726.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 721.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 720.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 719.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 714.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 712.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 711.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 708.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 703.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 701.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 700.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 698.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 687.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 686.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 686.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 682.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 681.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 681.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 677.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 673.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 672.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 659.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 658.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 657.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 654.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 654.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 654.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 652.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 649.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 648.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 644.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 642.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 638.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 638.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 635.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 629.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 628.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 627.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 626.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 619.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 618.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 618.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 614.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 609.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 604.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 597.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 586.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 582.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 555.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 552.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 542.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 541.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 541.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 538.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 526.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 508.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 496.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 490.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 486.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 478.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 63.4
FF:10181-103D1 60 years, female 75.4
FF:10159-103A6 76 years, female 51.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 299.8
Samples: 4

Max nTPM: 376.0
Min nTPM: 254.9
Sample A Female 254.9
Sample B Female 313.3
Sample C Male 376.0
Sample D Male 255.0
Ventral spinal cord
nTPM: 313.8
Samples: 4

Max nTPM: 357.0
Min nTPM: 261.9
Sample A Female 261.9
Sample B Female 357.0
Sample C Male 336.4
Sample D Male 299.8

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