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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:258.0 nTPM
HPA Brain:156.0 nTPM
GTEx:258.0 nTPM
FANTOM5:192.1 Scaled Tags Per Million
Pig:46.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 133.3
1981 Female, age 72, midline 189.5
2565 Male, age 75, midline 141.6
2194 Female, age 79, both hemispheres 121.8
2048 Male, age 55, midline 109.9
2816 Male, age 47, midline 103.9
Cervical spinal cord, dorsal horn
nTPM: 156.0
2173 Female, age 72, unknown 202.2
2069 Male, age 47, both hemispheres 192.3
2296 Male, age 66, both hemispheres 181.5
1877 Male, age 55, unknown 131.9
2721 Male, age 90, both hemispheres 114.8
2297 Male, age 75, both hemispheres 113.5
Cervical spinal cord, ventral horn
nTPM: 148.5
2098 Female, age 72, unknown 194.3
2480 Male, age 75, both hemispheres 173.4
2809 Male, age 90, both hemispheres 159.2
2068 Male, age 55, unknown 145.7
2295 Male, age 66, both hemispheres 124.3
2820 Female, age 79, both hemispheres 93.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

258.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 258.0
Samples: 159

Max nTPM: 458.6
Min nTPM: 129.3
Std nTPM: 56.6
Median nTPM: 249.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 458.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 439.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 426.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 403.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 399.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 374.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 360.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 358.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 352.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 342.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 340.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 339.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 338.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 335.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 333.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 329.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 329.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 326.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 325.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 324.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 318.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 316.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 314.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 313.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 311.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 307.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 307.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 307.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 302.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 300.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 298.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 297.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 297.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 296.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 293.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 291.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 291.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 291.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 290.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 290.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 290.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 289.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 287.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 287.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 285.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 283.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 282.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 282.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 279.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 279.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 278.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 277.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 274.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 272.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 272.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 271.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 271.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 271.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 270.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 269.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 268.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 268.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 266.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 266.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 264.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 264.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 263.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 261.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 261.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 261.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 261.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 260.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 259.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 257.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 257.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 256.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 255.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 252.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 250.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 249.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 249.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 248.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 248.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 247.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 247.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 247.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 247.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 246.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 245.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 245.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 245.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 243.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 242.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 242.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 242.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 241.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 240.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 240.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 238.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 238.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 236.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 235.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 234.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 234.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 234.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 234.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 232.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 232.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 231.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 230.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 229.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 227.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 226.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 225.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 224.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 224.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 222.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 220.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 219.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 219.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 219.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 217.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 215.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 215.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 213.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 213.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 213.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 211.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 210.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 209.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 208.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 208.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 207.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 207.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 206.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 204.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 204.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 201.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 199.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 198.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 198.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 197.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 195.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 193.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 193.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 190.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 189.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 188.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 186.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 183.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 176.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 176.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 172.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 156.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 156.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 140.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 137.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 129.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

192.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 192.1
FF:10181-103D1 60 years, female 283.4
FF:10159-103A6 76 years, female 100.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 38.9
Samples: 4

Max nTPM: 41.4
Min nTPM: 35.9
Sample A Female 39.4
Sample B Female 35.9
Sample C Male 41.4
Sample D Male 39.0
Ventral spinal cord
nTPM: 46.6
Samples: 4

Max nTPM: 53.9
Min nTPM: 37.4
Sample A Female 41.6
Sample B Female 53.3
Sample C Male 53.9
Sample D Male 37.4

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