MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.7 nTPM
HPA Brain:100.6 nTPM
GTEx:31.7 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:94.9 nTPM
Mouse:163.4 nTPM
Allen mouse:20.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.7
2666 Male, age 74, left hemisphere 149.5
2219 Male, age 76, both hemispheres 100.6
1827 Male, age 72, unknown 97.2
2019 Male, age 18, unknown 90.0
2411 Female, age 72, unknown 86.6
1870 Female, age 42, unknown 80.4
2828 Female, age 72, unknown 79.9
1833 Male, age 53, unknown 69.6
2586 Male, age 75, left hemisphere 69.3
1830 Male, age 51, unknown 63.9
Dorsal raphe nucleus
nTPM: 80.8
2298 Female, age 72, unknown 101.8
2047 Male, age 72, unknown 89.6
2750 Male, age 76, both hemispheres 82.4
1828 Male, age 53, unknown 77.9
2016 Female, age 72, unknown 52.5
Inferior colliculus
nTPM: 92.0
2097 Female, age 72, unknown 103.1
1848 Female, age 42, unknown 96.0
2849 Male, age 72, unknown 85.7
1890 Male, age 53, unknown 83.2
Median raphe nucleus
nTPM: 100.6
2220 Male, age 76, midline 100.6
Periaquaductal grey, anterior
nTPM: 88.8
1795 Male, age 51, unknown 98.1
1947 Male, age 18, unknown 89.2
2502 Female, age 75, unknown 79.3
Periaquaductal grey, dorsal
nTPM: 69.6
1840 Male, age 53, unknown 75.4
1831 Male, age 72, unknown 70.1
2464 Female, age 72, unknown 68.5
2850 Male, age 76, both hemispheres 64.3
Periaquaductal grey, lateral
nTPM: 63.7
2053 Male, age 18, unknown 66.7
2140 Male, age 76, both hemispheres 65.2
2272 Male, age 74, both hemispheres 59.2
Pretectal area
nTPM: 93.3
2007 Male, age 72, unknown 131.6
1816 Male, age 51, unknown 130.5
1817 Female, age 42, unknown 124.4
1944 Female, age 72, unknown 124.4
2224 Female, age 72, unknown 94.0
2667 Female, age 75, unknown 92.6
1815 Male, age 53, unknown 91.8
2825 Male, age 18, unknown 74.0
2316 Male, age 76, right hemisphere 62.9
2407 Male, age 75, both hemispheres 54.6
2273 Male, age 74, both hemispheres 45.4
Red nucleus
nTPM: 66.3
2584 Male, age 75, left hemisphere 92.8
2785 Male, age 18, unknown 89.9
1821 Female, age 72, unknown 71.5
1954 Female, age 42, unknown 70.5
2823 Male, age 76, right hemisphere 66.8
2588 Male, age 74, left hemisphere 65.9
2769 Male, age 72, unknown 65.1
2227 Male, age 72, unknown 64.2
2503 Female, age 72, unknown 58.3
1865 Male, age 51, unknown 57.4
1904 Male, age 53, unknown 55.6
2725 Female, age 75, unknown 37.1
Substantia nigra
nTPM: 73.1
1889 Female, age 72, unknown 111.8
1941 Male, age 53, unknown 108.7
1916 Female, age 42, unknown 93.3
2583 Male, age 75, right hemisphere 71.4
1851 Male, age 51, unknown 70.5
2665 Male, age 74, both hemispheres 70.3
2241 Male, age 72, unknown 62.0
2409 Female, age 72, unknown 52.6
2699 Male, age 18, unknown 47.9
2590 Female, age 75, unknown 42.8
Superior colliculus
nTPM: 95.0
2668 Female, age 75, unknown 252.2
2087 Female, age 72, unknown 105.9
2261 Male, age 18, unknown 95.9
1895 Male, age 76, right hemisphere 94.0
1796 Male, age 53, unknown 90.9
1839 Male, age 51, unknown 77.8
1913 Female, age 42, unknown 65.0
2587 Male, age 74, left hemisphere 63.4
1995 Male, age 72, unknown 52.8
2664 Male, age 75, both hemispheres 52.2
Ventral tegmental area
nTPM: 76.8
2218 Male, age 76, both hemispheres 89.0
2410 Female, age 72, unknown 84.7
1915 Female, age 42, unknown 82.8
1942 Male, age 51, unknown 75.9
2021 Male, age 53, unknown 64.8
2223 Female, age 72, unknown 63.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.7
Samples: 139

Max nTPM: 193.3
Min nTPM: 5.8
Std nTPM: 24.6
Median nTPM: 23.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 193.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 110.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 81.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 80.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 78.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 73.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 70.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 67.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 64.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 63.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 94.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.8
Samples: 4

Max nTPM: 105.0
Min nTPM: 19.0
Sample A Female 105.0
Sample B Female 43.0
Sample C Male 96.2
Sample D Male 19.0
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 142.9
Min nTPM: 17.1
Sample A Female 17.1
Sample B Female 46.4
Sample C Male 142.9
Sample D Male 119.0
Periaqueductal gray
nTPM: 57.9
Samples: 3

Max nTPM: 79.2
Min nTPM: 46.1
Sample B Female 46.1
Sample C Male 79.2
Sample D Male 48.3
Superior colliculi
nTPM: 94.9
Samples: 4

Max nTPM: 129.9
Min nTPM: 38.5
Sample A Female 107.2
Sample B Female 38.5
Sample C Male 129.9
Sample D Male 104.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 163.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.3
Samples: 4

Max nTPM: 183.1
Min nTPM: 149.8
Sample A Male 151.3
Sample B Male 149.8
Sample C Female 183.1
Sample D Female 169.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.9
1408 Antisense, RP_040625_02_B11, Mouse strain C57BL/6J (56 days, male) 20.9
1407 Antisense, RP_040625_02_B11, Mouse strain C57BL/6J (56 days, male) 6.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org