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SLC22A1
HPA
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  • SLC22A1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC22A1
Synonyms OCT1
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 22 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 6
Cytoband q25.3
Chromosome location (bp) 160121815 - 160158718
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000175003 (version 109)
Entrez gene 6580
HGNC HGNC:10963
UniProt O15245 (UniProt - Evidence at protein level)
neXtProt NX_O15245
GeneCards SLC22A1
Antibodypedia SLC22A1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Electrogenic voltage-dependent transporter that mediates the transport of a variety of organic cations such as endogenous bioactive amines, cationic drugs and xenobiotics 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16. Functions as a pH- and Na(+)-independent, bidirectional transporter (By similarity). Cation cellular uptake or release is driven by the electrochemical potential (i.e. membrane potential and concentration gradient) and substrate selectivity (By similarity). Hydrophobicity is a major requirement for recognition in polyvalent substrates and inhibitors (By similarity). Primarily expressed at the basolateral membrane of hepatocytes and proximal tubules and involved in the uptake and disposition of cationic compounds by hepatic and renal clearance from the blood flow (By similarity). Most likely functions as an uptake carrier in enterocytes contributing to the intestinal elimination of organic cations from the systemic circulation 17. Transports endogenous monoamines such as N-1-methylnicotinamide (NMN), guanidine, histamine, neurotransmitters dopamine, serotonin and adrenaline 18, 19, 20, 21. Also transports natural polyamines such as spermidine, agmatine and putrescine at low affinity, but relatively high turnover 22. Involved in the hepatic uptake of vitamin B1/thiamine, hence regulating hepatic lipid and energy metabolism 23. Mediates the bidirectional transport of acetylcholine (ACh) at the apical membrane of ciliated cell in airway epithelium, thereby playing a role in luminal release of ACh from bronchial epithelium 24. Transports dopaminergic neuromodulators cyclo(his-pro) and salsolinol with lower efficency 25. Also capable of transporting non-amine endogenous compounds such as prostaglandin E2 (PGE2) and prostaglandin F2-alpha (PGF2-alpha) 26. May contribute to the transport of cationic compounds in testes across the blood-testis-barrier (Probable). Also involved in the uptake of xenobiotics tributylmethylammonium (TBuMA), quinidine, N-methyl-quinine (NMQ), N-methyl-quinidine (NMQD) N-(4,4-azo-n-pentyl)-quinuclidine (APQ), azidoprocainamide methoiodide (AMP), N-(4,4-azo-n-pentyl)-21-deoxyajmalinium (APDA) and 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP) 27, 28, 29, 30.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

Polyspecific organic cation transporters in the liver, kidney, intestine, and other organs are critical for elimination of many endogenous small organic cations as well as a wide array of drugs and environmental toxins. This gene is one of three similar cation transporter genes located in a cluster on chromosome 6. The encoded protein contains twelve putative transmembrane domains and is a plasma integral membrane protein. Two transcript variants encoding two different isoforms have been found for this gene, but only the longer variant encodes a functional transporter. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC22A1-201
ENSP00000318103
ENST00000324965
O15245
[Direct mapping] Solute carrier family 22 member 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005326 [neurotransmitter transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006836 [neurotransmitter transport]
GO:0006837 [serotonin transport]
GO:0008504 [monoamine transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0009925 [basal plasma membrane]
GO:0015075 [ion transmembrane transporter activity]
GO:0015101 [organic cation transmembrane transporter activity]
GO:0015132 [prostaglandin transmembrane transporter activity]
GO:0015214 [pyrimidine nucleoside transmembrane transporter activity]
GO:0015489 [putrescine transmembrane transporter activity]
GO:0015606 [spermidine transmembrane transporter activity]
GO:0015651 [quaternary ammonium group transmembrane transporter activity]
GO:0015695 [organic cation transport]
GO:0015697 [quaternary ammonium group transport]
GO:0015732 [prostaglandin transport]
GO:0015844 [monoamine transport]
GO:0015847 [putrescine transport]
GO:0015848 [spermidine transport]
GO:0015872 [dopamine transport]
GO:0015874 [norepinephrine transport]
GO:0015888 [thiamine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0016328 [lateral plasma membrane]
GO:0019534 [toxin transmembrane transporter activity]
GO:0022857 [transmembrane transporter activity]
GO:0042908 [xenobiotic transport]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0048241 [epinephrine transport]
GO:0051610 [serotonin uptake]
GO:0051620 [norepinephrine uptake]
GO:0055085 [transmembrane transport]
GO:0071934 [thiamine transmembrane transport]
GO:0072530 [purine-containing compound transmembrane transport]
GO:0090494 [dopamine uptake]
GO:0098590 [plasma membrane region]
GO:0098793 [presynapse]
GO:0150104 [transport across blood-brain barrier]
GO:1901374 [acetate ester transport]
GO:1901998 [toxin transport]
GO:1903711 [spermidine transmembrane transport]
GO:1990962 [xenobiotic transport across blood-brain barrier]
Show all
506 aa
56.1 kDa
No >9
SLC22A1-202
ENSP00000355930
ENST00000366963
O15245
[Direct mapping] Solute carrier family 22 member 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005277 [acetylcholine transmembrane transporter activity]
GO:0005326 [neurotransmitter transmembrane transporter activity]
GO:0005330 [dopamine:sodium symporter activity]
GO:0005334 [norepinephrine:sodium symporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0006836 [neurotransmitter transport]
GO:0006837 [serotonin transport]
GO:0008504 [monoamine transmembrane transporter activity]
GO:0008513 [secondary active organic cation transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0009925 [basal plasma membrane]
GO:0010248 [establishment or maintenance of transmembrane electrochemical gradient]
GO:0015075 [ion transmembrane transporter activity]
GO:0015101 [organic cation transmembrane transporter activity]
GO:0015132 [prostaglandin transmembrane transporter activity]
GO:0015214 [pyrimidine nucleoside transmembrane transporter activity]
GO:0015234 [thiamine transmembrane transporter activity]
GO:0015489 [putrescine transmembrane transporter activity]
GO:0015606 [spermidine transmembrane transporter activity]
GO:0015651 [quaternary ammonium group transmembrane transporter activity]
GO:0015695 [organic cation transport]
GO:0015697 [quaternary ammonium group transport]
GO:0015732 [prostaglandin transport]
GO:0015844 [monoamine transport]
GO:0015847 [putrescine transport]
GO:0015848 [spermidine transport]
GO:0015872 [dopamine transport]
GO:0015874 [norepinephrine transport]
GO:0015888 [thiamine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0016328 [lateral plasma membrane]
GO:0019534 [toxin transmembrane transporter activity]
GO:0022857 [transmembrane transporter activity]
GO:0042802 [identical protein binding]
GO:0042908 [xenobiotic transport]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0048241 [epinephrine transport]
GO:0051610 [serotonin uptake]
GO:0051620 [norepinephrine uptake]
GO:0055085 [transmembrane transport]
GO:0071934 [thiamine transmembrane transport]
GO:0072530 [purine-containing compound transmembrane transport]
GO:0090494 [dopamine uptake]
GO:0098590 [plasma membrane region]
GO:0098655 [cation transmembrane transport]
GO:0098793 [presynapse]
GO:0150104 [transport across blood-brain barrier]
GO:1901235 [(R)-carnitine transmembrane transporter activity]
GO:1901374 [acetate ester transport]
GO:1901998 [toxin transport]
GO:1902270 [(R)-carnitine transmembrane transport]
GO:1902616 [acyl carnitine transmembrane transport]
GO:1903711 [spermidine transmembrane transport]
GO:1990962 [xenobiotic transport across blood-brain barrier]
Show all
554 aa
61.2 kDa
No >9
SLC22A1-203
ENSP00000409557
ENST00000457470
O15245
[Direct mapping] Solute carrier family 22 member 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005326 [neurotransmitter transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006836 [neurotransmitter transport]
GO:0006837 [serotonin transport]
GO:0008504 [monoamine transmembrane transporter activity]
GO:0008514 [organic anion transmembrane transporter activity]
GO:0009925 [basal plasma membrane]
GO:0015075 [ion transmembrane transporter activity]
GO:0015101 [organic cation transmembrane transporter activity]
GO:0015132 [prostaglandin transmembrane transporter activity]
GO:0015214 [pyrimidine nucleoside transmembrane transporter activity]
GO:0015489 [putrescine transmembrane transporter activity]
GO:0015606 [spermidine transmembrane transporter activity]
GO:0015651 [quaternary ammonium group transmembrane transporter activity]
GO:0015695 [organic cation transport]
GO:0015697 [quaternary ammonium group transport]
GO:0015732 [prostaglandin transport]
GO:0015844 [monoamine transport]
GO:0015847 [putrescine transport]
GO:0015848 [spermidine transport]
GO:0015872 [dopamine transport]
GO:0015874 [norepinephrine transport]
GO:0015888 [thiamine transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0016328 [lateral plasma membrane]
GO:0019534 [toxin transmembrane transporter activity]
GO:0022857 [transmembrane transporter activity]
GO:0042908 [xenobiotic transport]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0048241 [epinephrine transport]
GO:0051610 [serotonin uptake]
GO:0051620 [norepinephrine uptake]
GO:0055085 [transmembrane transport]
GO:0071934 [thiamine transmembrane transport]
GO:0072530 [purine-containing compound transmembrane transport]
GO:0090494 [dopamine uptake]
GO:0098590 [plasma membrane region]
GO:0098793 [presynapse]
GO:0150104 [transport across blood-brain barrier]
GO:1901374 [acetate ester transport]
GO:1901998 [toxin transport]
GO:1903711 [spermidine transmembrane transport]
GO:1990962 [xenobiotic transport across blood-brain barrier]
Show all
483 aa
53.6 kDa
No >9
SLC22A1-207
ENSP00000440105
ENST00000540443
F5GY86
[Direct mapping] Solute carrier family 22 member 1
Show all
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0022857 [transmembrane transporter activity]
GO:0055085 [transmembrane transport]
Show all
48 aa
5.4 kDa
No 0

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