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MARCKSL1
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  • MARCKSL1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:967.8 nTPM
HPA Brain:617.0 nTPM
GTEx:967.8 nTPM
FANTOM5:656.5 Scaled Tags Per Million
Pig:1971.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

617.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 554.7
1981 Female, age 72, midline 641.0
2816 Male, age 47, midline 607.1
2194 Female, age 79, both hemispheres 568.2
2565 Male, age 75, midline 482.0
2048 Male, age 55, midline 475.5
Cervical spinal cord, dorsal horn
nTPM: 603.1
2296 Male, age 66, both hemispheres 1070.4
2173 Female, age 72, unknown 885.1
2069 Male, age 47, both hemispheres 522.5
1877 Male, age 55, unknown 495.5
2721 Male, age 90, both hemispheres 362.1
2297 Male, age 75, both hemispheres 282.8
Cervical spinal cord, ventral horn
nTPM: 617.0
2068 Male, age 55, unknown 690.1
2820 Female, age 79, both hemispheres 674.4
2098 Female, age 72, unknown 639.0
2295 Male, age 66, both hemispheres 607.9
2809 Male, age 90, both hemispheres 548.4
2480 Male, age 75, both hemispheres 542.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

967.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 967.8
Samples: 159

Max nTPM: 2028.4
Min nTPM: 178.9
Std nTPM: 395.5
Median nTPM: 929.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2028.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1969.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1845.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1832.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1802.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1736.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1696.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1634.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1624.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1604.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1592.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1574.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1550.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1542.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1541.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1509.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1508.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1488.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1481.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1471.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1457.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1411.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1410.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1398.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1392.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1392.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1390.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1364.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1345.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1343.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1339.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1337.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1294.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1293.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1289.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1285.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1283.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1280.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1280.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1279.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1268.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1266.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1261.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1260.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1255.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1238.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1232.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1224.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1217.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1199.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1184.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1172.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1125.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1104.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1084.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1078.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1070.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1069.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1066.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1064.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1061.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1044.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1042.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1025.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1018.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1006.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1005.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1005.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 994.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 991.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 984.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 983.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 973.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 962.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 955.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 954.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 950.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 949.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 947.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 929.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 925.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 913.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 901.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 900.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 888.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 873.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 873.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 869.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 866.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 855.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 847.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 840.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 837.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 834.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 820.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 814.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 808.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 805.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 790.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 770.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 767.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 763.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 754.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 751.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 751.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 743.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 742.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 737.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 731.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 730.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 728.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 715.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 715.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 711.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 705.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 703.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 702.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 695.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 692.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 690.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 688.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 681.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 677.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 670.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 664.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 662.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 657.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 621.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 615.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 607.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 603.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 595.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 587.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 571.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 566.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 553.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 551.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 521.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 519.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 517.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 504.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 494.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 485.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 474.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 473.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 459.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 425.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 415.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 395.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 388.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 376.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 368.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 366.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 298.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 268.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 266.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 223.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 181.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 178.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

656.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 656.5
FF:10181-103D1 60 years, female 940.6
FF:10159-103A6 76 years, female 372.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1971.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1456.8
Samples: 4

Max nTPM: 1551.6
Min nTPM: 1345.8
Sample A Female 1345.8
Sample B Female 1519.4
Sample C Male 1410.3
Sample D Male 1551.6
Ventral spinal cord
nTPM: 1971.6
Samples: 4

Max nTPM: 2705.0
Min nTPM: 1577.6
Sample A Female 1747.2
Sample B Female 1856.5
Sample C Male 1577.6
Sample D Male 2705.0

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