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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:107.1 nTPM
HPA Brain:73.6 nTPM
GTEx:107.1 nTPM
FANTOM5:188.9 Scaled Tags Per Million
Pig:187.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 70.0
1981 Female, age 72, midline 89.1
2565 Male, age 75, midline 72.8
2194 Female, age 79, both hemispheres 71.7
2048 Male, age 55, midline 60.2
2816 Male, age 47, midline 56.1
Cervical spinal cord, dorsal horn
nTPM: 70.8
2173 Female, age 72, unknown 108.1
2296 Male, age 66, both hemispheres 82.8
2069 Male, age 47, both hemispheres 76.5
1877 Male, age 55, unknown 56.8
2297 Male, age 75, both hemispheres 51.1
2721 Male, age 90, both hemispheres 49.3
Cervical spinal cord, ventral horn
nTPM: 73.6
2098 Female, age 72, unknown 93.3
2809 Male, age 90, both hemispheres 78.9
2480 Male, age 75, both hemispheres 74.2
2295 Male, age 66, both hemispheres 70.3
2068 Male, age 55, unknown 69.8
2820 Female, age 79, both hemispheres 55.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 107.1
Samples: 159

Max nTPM: 163.6
Min nTPM: 60.9
Std nTPM: 18.8
Median nTPM: 105.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 163.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 155.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 152.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 146.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 146.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 143.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 140.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 138.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 138.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 138.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 136.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 135.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 134.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 133.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 133.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 132.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 131.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 130.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 130.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 129.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 128.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 128.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 125.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 125.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 125.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 125.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 124.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 124.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 123.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 123.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 123.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 123.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 122.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 122.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 122.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 122.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 122.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 122.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 120.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 120.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 119.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 118.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 118.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 118.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 117.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 117.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 117.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 116.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 116.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 115.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 115.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 115.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 115.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 114.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 113.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 113.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 112.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 112.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 112.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 112.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 110.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 110.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 110.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 110.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 109.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 109.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 108.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 108.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 108.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 108.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 108.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 108.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 107.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 107.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 107.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 107.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 106.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 105.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 105.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 105.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 104.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 104.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 104.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 104.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 104.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 104.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 103.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 103.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 103.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 103.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 102.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 101.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 101.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 100.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 100.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 99.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 99.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 98.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 98.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 98.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 98.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 98.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 98.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 98.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 98.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 98.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 97.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 97.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 97.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 97.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 96.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 96.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 96.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 95.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 95.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 95.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 95.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 94.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 94.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 94.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 94.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 94.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 94.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 94.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 93.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 92.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 92.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 92.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 91.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 90.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 87.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 87.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 86.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 85.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 83.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 83.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 82.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 81.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 81.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 81.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 80.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 80.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 80.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 80.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 79.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 75.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 74.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 73.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 72.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 72.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 71.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 70.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 62.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 60.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

188.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 188.9
FF:10181-103D1 60 years, female 244.1
FF:10159-103A6 76 years, female 133.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 154.0
Samples: 4

Max nTPM: 175.1
Min nTPM: 141.7
Sample A Female 146.7
Sample B Female 152.5
Sample C Male 175.1
Sample D Male 141.7
Ventral spinal cord
nTPM: 187.8
Samples: 4

Max nTPM: 203.8
Min nTPM: 176.6
Sample A Female 176.6
Sample B Female 203.8
Sample C Male 180.9
Sample D Male 189.7

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