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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

113.649
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:87.0 nTPM
FANTOM5:110.2 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:36.3 nTPM
Allen mouse:0.6 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA004689
Thalamus mean intensity 113.649
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 25.543
Parafascicular thalamic nucleus 35.922
Pregeniculate nucleus -
Stria terminalis 35.596
Zona incerta 22.846
Anterodorsal thalamic nucleus 72.500
Reticular thalamic nucleus 17.697
Vental anterior thalamic nucleus 20.796
Medial habenular nucleus 113.649
Laterodorsal thalamic area -
Paraventricular thalamic nucleus 87.981
Central medial thalamic area 46.854
Ventral lateral thalamic area -
Ventral medial thalamic area -
Lateral habenulal nucleus 46.306
Ventral posterior thalamus -
Anterior pretactal nucleus 30.398
Retromammillary nucleus 43.108

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 69.5
2396 Male, age 61, right hemisphere 76.1
2497 Male, age 66, unknown 67.8
2032 Female, age 42, unknown 64.5
Centromedial thalamic nucleus
nTPM: 87.0
2279 Female, age 85, left hemisphere 121.7
2401 Male, age 76, right hemisphere 52.3
Habenula
nTPM: 45.9
2203 Male, age 61, left hemisphere 48.9
2276 Male, age 66, unknown 47.0
2252 Male, age 62, unknown 46.4
1957 Male, age 80, both hemispheres 41.2
Lateral geniculate body
nTPM: 58.3
2659 Male, age 66, unknown 69.4
2575 Female, age 94, right hemisphere 65.8
2841 Male, age 80, both hemispheres 64.3
2035 Female, age 72, unknown 59.3
2857 Male, age 74, right hemisphere 59.3
1953 Male, age 62, unknown 58.7
2399 Male, age 61, left hemisphere 49.4
2106 Female, age 67, right hemisphere 40.2
Lateral thalamic nuclei
nTPM: 63.4
2577 Male, age 74, both hemispheres 73.5
2573 Female, age 94, left hemisphere 67.9
2661 Female, age 72, unknown 66.2
2765 Female, age 67, both hemispheres 62.7
1903 Male, age 76, left hemisphere 46.7
Medial dorsal thalamic nucleus
nTPM: 54.7
2660 Female, age 72, unknown 76.7
2576 Male, age 74, both hemispheres 62.7
2492 Male, age 75, right hemisphere 60.4
1930 Female, age 42, unknown 55.4
1971 Male, age 61, right hemisphere 55.2
2039 Female, age 72, unknown 54.0
2572 Female, age 94, right hemisphere 53.4
1859 Male, age 76, both hemispheres 52.9
1810 Male, age 48, unknown 51.2
2402 Female, age 67, both hemispheres 51.1
2026 Male, age 62, unknown 49.6
2498 Male, age 66, unknown 45.7
2283 Male, age 80, right hemisphere 43.0
Medial geniculate body
nTPM: 63.3
2571 Male, age 75, right hemisphere 101.1
2217 Female, age 72, unknown 64.6
2650 Female, age 94, left hemisphere 64.4
2657 Male, age 74, right hemisphere 57.5
2049 Male, age 76, both hemispheres 54.1
1811 Female, age 42, unknown 51.0
2207 Male, age 80, right hemisphere 50.1
Nucleus reuniens
nTPM: 69.2
2210 Female, age 85, left hemisphere 98.9
2205 Male, age 80, left hemisphere 62.6
2212 Female, age 67, left hemisphere 46.3
Nucleus rhomboideus
nTPM: 68.6
2280 Female, age 85, left hemisphere 99.7
2213 Female, age 67, left hemisphere 60.2
2206 Male, age 80, both hemispheres 45.9
Posterior thalamic nucleus
nTPM: 58.0
2266 Male, age 76, right hemisphere 65.8
2649 Female, age 94, both hemispheres 59.4
2655 Male, age 74, right hemisphere 59.2
2495 Female, age 67, right hemisphere 47.5
Pulvinar
nTPM: 54.7
2582 Female, age 72, unknown 63.6
1899 Female, age 42, unknown 62.8
2499 Male, age 66, unknown 62.4
2398 Male, age 61, left hemisphere 56.3
2724 Male, age 74, right hemisphere 55.8
1972 Male, age 62, unknown 53.1
2214 Male, age 76, right hemisphere 51.8
1929 Male, age 48, unknown 51.7
1932 Male, age 80, right hemisphere 46.6
2496 Female, age 67, right hemisphere 43.2
Subthalamic nucleus
nTPM: 66.7
2216 Male, age 48, unknown 79.7
2056 Female, age 72, unknown 78.9
2124 Male, age 62, unknown 72.4
2282 Male, age 61, both hemispheres 69.0
2779 Female, age 42, unknown 66.5
2658 Male, age 74, both hemispheres 59.5
2275 Male, age 66, unknown 55.1
2406 Female, age 72, unknown 52.4
Ventral posterolateral thalamic nucleus
nTPM: 62.3
2581 Female, age 72, unknown 78.0
2578 Male, age 74, both hemispheres 71.4
2570 Male, age 75, right hemisphere 68.4
2397 Male, age 61, right hemisphere 54.8
2740 Male, age 76, right hemisphere 53.6
2197 Male, age 80, both hemispheres 47.6
Ventral posteromedial thalamic nucleus
nTPM: 61.1
2127 Male, age 76, right hemisphere 73.1
2281 Male, age 75, right hemisphere 65.7
2653 Male, age 74, both hemispheres 61.9
2202 Male, age 61, left hemisphere 56.1
2758 Male, age 80, both hemispheres 48.7
Ventral thalamic nuclei
nTPM: 65.2
2652 Male, age 74, left hemisphere 82.5
2580 Male, age 66, unknown 71.8
2291 Female, age 72, unknown 71.6
2858 Female, age 72, unknown 70.5
2285 Male, age 62, unknown 60.5
1845 Male, age 48, unknown 59.5
1912 Female, age 42, unknown 58.2
1860 Male, age 76, both hemispheres 57.4
2204 Male, age 80, both hemispheres 55.1
Zona incerta
nTPM: 66.8
2663 Female, age 72, unknown 82.5
2215 Male, age 66, unknown 74.2
2403 Male, age 62, unknown 69.0
2822 Male, age 74, right hemisphere 58.9
2208 Male, age 80, right hemisphere 49.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 110.2
FF:10154-103A1 76 years, female 110.2

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.9
Pig sample Sample description nTPM
Thalamus
nTPM: 39.9
Samples: 4

Max nTPM: 47.0
Min nTPM: 33.5
Sample A Female 47.0
Sample B Female 33.5
Sample C Male 34.7
Sample D Male 44.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 36.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 37.6
Sample C Female 36.5
Sample D Female 39.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.6
69526797 Antisense, RP_050421_01_F08, Mouse strain C57BL/6J (56 days, male) 0.6

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