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ATG13
HPA
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  • SUMMARY

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  • STRUCT & INT

  • ATG13
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ATG13
Synonyms KIAA0652
Gene descriptioni

Full gene name according to HGNC.

Autophagy related 13
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband p11.2
Chromosome location (bp) 46617527 - 46674818
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

18
Ensembl ENSG00000175224 (version 109)
Entrez gene 9776
HGNC HGNC:29091
UniProt O75143 (UniProt - Evidence at protein level)
neXtProt NX_O75143
GeneCards ATG13
Antibodypedia ATG13 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Autophagy factor required for autophagosome formation and mitophagy. Target of the TOR kinase signaling pathway that regulates autophagy through the control of the phosphorylation status of ATG13 and ULK1, and the regulation of the ATG13-ULK1-RB1CC1 complex. Through its regulation of ULK1 activity, plays a role in the regulation of the kinase activity of mTORC1 and cell proliferation.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Autophagy
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is an autophagy factor and a target of the TOR kinase signaling pathway. The encoded protein is essential for autophagosome formation and mitophagy. [provided by RefSeq, Oct 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ATG13-201
ENSP00000352500
ENST00000359513
O75143
[Direct mapping] Autophagy-related protein 13
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0000423 [mitophagy]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0006914 [autophagy]
GO:0008285 [negative regulation of cell population proliferation]
GO:0010508 [positive regulation of autophagy]
GO:0019898 [extrinsic component of membrane]
GO:0019901 [protein kinase binding]
GO:0034497 [protein localization to phagophore assembly site]
GO:0034727 [piecemeal microautophagy of the nucleus]
GO:0046777 [protein autophosphorylation]
GO:1903059 [regulation of protein lipidation]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
517 aa
56.6 kDa
No 0
ATG13-202
ENSP00000378919
ENST00000395549
J9JIF6
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0006914 [autophagy]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
198 aa
22.2 kDa
No 0
ATG13-203
ENSP00000433543
ENST00000524625
O75143
[Direct mapping] Autophagy-related protein 13
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0000423 [mitophagy]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0006914 [autophagy]
GO:0008285 [negative regulation of cell population proliferation]
GO:0010508 [positive regulation of autophagy]
GO:0019898 [extrinsic component of membrane]
GO:0019901 [protein kinase binding]
GO:0034497 [protein localization to phagophore assembly site]
GO:0034727 [piecemeal microautophagy of the nucleus]
GO:0046777 [protein autophosphorylation]
GO:1903059 [regulation of protein lipidation]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
480 aa
52.8 kDa
No 0
ATG13-204
ENSP00000436174
ENST00000525009
H0YEM7
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
193 aa
20.6 kDa
No 0
ATG13-207
ENSP00000431974
ENST00000526508
O75143
[Direct mapping] Autophagy-related protein 13
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0000423 [mitophagy]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0006914 [autophagy]
GO:0008285 [negative regulation of cell population proliferation]
GO:0010508 [positive regulation of autophagy]
GO:0019898 [extrinsic component of membrane]
GO:0019901 [protein kinase binding]
GO:0034497 [protein localization to phagophore assembly site]
GO:0034727 [piecemeal microautophagy of the nucleus]
GO:0046777 [protein autophosphorylation]
GO:1903059 [regulation of protein lipidation]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
517 aa
56.6 kDa
No 0
ATG13-211
ENSP00000432412
ENST00000528494
O75143
[Direct mapping] Autophagy-related protein 13
Show all
Transporters
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0000423 [mitophagy]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0006914 [autophagy]
GO:0008285 [negative regulation of cell population proliferation]
GO:0010508 [positive regulation of autophagy]
GO:0019898 [extrinsic component of membrane]
GO:0019901 [protein kinase binding]
GO:0034497 [protein localization to phagophore assembly site]
GO:0034727 [piecemeal microautophagy of the nucleus]
GO:0046777 [protein autophosphorylation]
GO:1903059 [regulation of protein lipidation]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
550 aa
60.2 kDa
No 0
ATG13-215
ENSP00000433756
ENST00000529655
O75143
[Direct mapping] Autophagy-related protein 13
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0000423 [mitophagy]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0006914 [autophagy]
GO:0008285 [negative regulation of cell population proliferation]
GO:0010508 [positive regulation of autophagy]
GO:0019898 [extrinsic component of membrane]
GO:0019901 [protein kinase binding]
GO:0034497 [protein localization to phagophore assembly site]
GO:0034727 [piecemeal microautophagy of the nucleus]
GO:0046777 [protein autophosphorylation]
GO:1903059 [regulation of protein lipidation]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
480 aa
52.8 kDa
No 0
ATG13-216
ENSP00000434390
ENST00000530500
O75143
[Direct mapping] Autophagy-related protein 13
Show all
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0000423 [mitophagy]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0006914 [autophagy]
GO:0008285 [negative regulation of cell population proliferation]
GO:0010508 [positive regulation of autophagy]
GO:0019898 [extrinsic component of membrane]
GO:0019901 [protein kinase binding]
GO:0034497 [protein localization to phagophore assembly site]
GO:0034727 [piecemeal microautophagy of the nucleus]
GO:0046777 [protein autophosphorylation]
GO:1903059 [regulation of protein lipidation]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
401 aa
44.1 kDa
No 0
ATG13-218
ENSP00000434125
ENST00000531933
H0YDR0
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
47 aa
5.1 kDa
No 0
ATG13-221
ENSP00000436931
ENST00000533325
E9PPR2
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0006914 [autophagy]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
119 aa
13.4 kDa
No 0
ATG13-223
ENSP00000462167
ENST00000577256
J3KRU6
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0006914 [autophagy]
Show all
56 aa
6.4 kDa
No 0
ATG13-224
ENSP00000462644
ENST00000578626
J3KST9
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
33 aa
3.9 kDa
No 0
ATG13-226
ENSP00000463808
ENST00000580238
A0A1B0GXJ3
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
32 aa
3.8 kDa
No 0
ATG13-227
ENSP00000464274
ENST00000581416
J3QRL1
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
Show all
50 aa
5.7 kDa
No 0
ATG13-228
ENSP00000463550
ENST00000581438
J3QLH7
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
13 aa
1.6 kDa
No 0
ATG13-229
ENSP00000464091
ENST00000582547
J3QR83
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
38 aa
4.4 kDa
No 0
ATG13-230
ENSP00000463998
ENST00000583249
J3QR16
[Direct mapping] Autophagy-related protein 13
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
27 aa
3.2 kDa
No 0
ATG13-231
ENSP00000507809
ENST00000683050
O75143
[Direct mapping] Autophagy-related protein 13
Show all
Transporters
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutational cancer driver genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000045 [autophagosome assembly]
GO:0000407 [phagophore assembly site]
GO:0000423 [mitophagy]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005829 [cytosol]
GO:0006468 [protein phosphorylation]
GO:0006914 [autophagy]
GO:0008285 [negative regulation of cell population proliferation]
GO:0010508 [positive regulation of autophagy]
GO:0019898 [extrinsic component of membrane]
GO:0019901 [protein kinase binding]
GO:0034497 [protein localization to phagophore assembly site]
GO:0034727 [piecemeal microautophagy of the nucleus]
GO:0046777 [protein autophosphorylation]
GO:0098780 [response to mitochondrial depolarisation]
GO:1903059 [regulation of protein lipidation]
GO:1903955 [positive regulation of protein targeting to mitochondrion]
GO:1990316 [Atg1/ULK1 kinase complex]
Show all
550 aa
60.2 kDa
No 0

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