MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.2 nTPM
HPA Brain:63.1 nTPM
GTEx:46.2 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:15.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.5
2828 Female, age 72, unknown 65.5
1827 Male, age 72, unknown 41.8
2586 Male, age 75, left hemisphere 40.5
2666 Male, age 74, left hemisphere 38.7
1870 Female, age 42, unknown 34.7
1830 Male, age 51, unknown 30.0
1833 Male, age 53, unknown 27.0
2019 Male, age 18, unknown 23.6
2411 Female, age 72, unknown 21.9
2219 Male, age 76, both hemispheres 21.7
Dorsal raphe nucleus
nTPM: 34.6
2016 Female, age 72, unknown 51.6
1828 Male, age 53, unknown 35.1
2298 Female, age 72, unknown 31.2
2047 Male, age 72, unknown 30.4
2750 Male, age 76, both hemispheres 24.5
Inferior colliculus
nTPM: 29.6
2849 Male, age 72, unknown 38.2
1848 Female, age 42, unknown 36.9
1890 Male, age 53, unknown 22.0
2097 Female, age 72, unknown 21.2
Median raphe nucleus
nTPM: 26.0
2220 Male, age 76, midline 26.0
Periaquaductal grey, anterior
nTPM: 48.7
1795 Male, age 51, unknown 52.3
2502 Female, age 75, unknown 48.5
1947 Male, age 18, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 47.6
2850 Male, age 76, both hemispheres 54.4
1840 Male, age 53, unknown 51.1
1831 Male, age 72, unknown 46.3
2464 Female, age 72, unknown 38.7
Periaquaductal grey, lateral
nTPM: 63.1
2140 Male, age 76, both hemispheres 73.1
2053 Male, age 18, unknown 65.3
2272 Male, age 74, both hemispheres 51.0
Pretectal area
nTPM: 42.6
2273 Male, age 74, both hemispheres 57.9
2825 Male, age 18, unknown 54.8
2667 Female, age 75, unknown 52.7
2316 Male, age 76, right hemisphere 50.0
1815 Male, age 53, unknown 43.0
2224 Female, age 72, unknown 41.9
1944 Female, age 72, unknown 41.1
2407 Male, age 75, both hemispheres 39.8
1816 Male, age 51, unknown 32.7
1817 Female, age 42, unknown 28.1
2007 Male, age 72, unknown 26.4
Red nucleus
nTPM: 34.1
2823 Male, age 76, right hemisphere 40.7
2725 Female, age 75, unknown 39.2
2227 Male, age 72, unknown 38.9
2769 Male, age 72, unknown 38.3
2503 Female, age 72, unknown 37.7
1954 Female, age 42, unknown 37.2
2588 Male, age 74, left hemisphere 34.9
1821 Female, age 72, unknown 32.2
1904 Male, age 53, unknown 31.8
1865 Male, age 51, unknown 30.4
2584 Male, age 75, left hemisphere 26.1
2785 Male, age 18, unknown 21.8
Substantia nigra
nTPM: 32.3
2699 Male, age 18, unknown 49.2
1851 Male, age 51, unknown 37.4
2409 Female, age 72, unknown 35.7
1916 Female, age 42, unknown 33.6
2665 Male, age 74, both hemispheres 32.0
2590 Female, age 75, unknown 31.8
2583 Male, age 75, right hemisphere 30.0
1941 Male, age 53, unknown 26.0
1889 Female, age 72, unknown 24.1
2241 Male, age 72, unknown 23.2
Superior colliculus
nTPM: 41.5
2664 Male, age 75, both hemispheres 59.7
1796 Male, age 53, unknown 50.0
1913 Female, age 42, unknown 44.5
1995 Male, age 72, unknown 42.8
2261 Male, age 18, unknown 42.5
1839 Male, age 51, unknown 42.4
2087 Female, age 72, unknown 41.2
2587 Male, age 74, left hemisphere 33.3
1895 Male, age 76, right hemisphere 31.0
2668 Female, age 75, unknown 27.1
Ventral tegmental area
nTPM: 35.8
2021 Male, age 53, unknown 48.2
1915 Female, age 42, unknown 40.2
1942 Male, age 51, unknown 39.9
2410 Female, age 72, unknown 32.6
2218 Male, age 76, both hemispheres 27.8
2223 Female, age 72, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.2
Samples: 139

Max nTPM: 150.8
Min nTPM: 4.4
Std nTPM: 23.8
Median nTPM: 41.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 150.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 126.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 99.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 98.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 98.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 92.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 90.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 79.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 77.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 76.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 12.2
Min nTPM: 9.0
Sample A Female 10.4
Sample B Female 12.2
Sample C Male 9.0
Sample D Male 10.6
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 13.4
Sample C Male 7.5
Sample D Male 7.5
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 13.3
Min nTPM: 7.7
Sample B Female 13.3
Sample C Male 7.7
Sample D Male 8.7
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.1
Sample A Female 7.6
Sample B Female 8.1
Sample C Male 7.1
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.6
Sample A Male 14.9
Sample B Male 15.2
Sample C Female 13.6
Sample D Female 17.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69170204 Antisense, RP_050321_04_G10, Mouse strain C57BL/6J (56 days, male) 0.6

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