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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:53.2 nTPM
HPA:53.2 nTPM
GTEx:36.7 nTPM
FANTOM5:122.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA037784
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.2
overview
Male, age 65
Small intestine sample 232
nTPM: 49.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 57.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 46.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 59.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 36.7
Samples: 187

Max nTPM: 81.2
Min nTPM: 12.2
Std nTPM: 14.6
Median nTPM: 32.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 81.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 75.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 72.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 70.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 69.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 67.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 66.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 65.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 64.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 64.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 63.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 62.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 61.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 61.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 61.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 61.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 61.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 60.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 60.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 60.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 59.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 59.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 58.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 57.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 57.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 56.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 55.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 53.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 53.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 53.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 53.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 52.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 52.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 52.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 52.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 51.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 51.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 51.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 50.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 50.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 48.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 48.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 47.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 47.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 46.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 46.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 45.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 44.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 44.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 44.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 44.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 43.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 42.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 42.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 42.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 42.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 41.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 41.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 41.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 41.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 40.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 40.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 39.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 39.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 39.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 39.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 38.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 38.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 38.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 38.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 38.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 38.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 38.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 37.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 37.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 37.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 37.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 37.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 37.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 37.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 36.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 36.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 36.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 35.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 35.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 35.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 35.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 35.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 34.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 34.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 34.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 33.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 32.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 32.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 32.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 32.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 32.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 32.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 32.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 32.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 32.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 31.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 31.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 31.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 31.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 31.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 30.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 30.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 30.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 30.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 30.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 30.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 30.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 29.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 29.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 29.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 29.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 29.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 29.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 29.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 28.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 28.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 28.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 28.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 28.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 27.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 27.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 27.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 27.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 27.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 27.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 26.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 26.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 26.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 26.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 26.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 26.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 26.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 26.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 26.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 26.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 25.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 25.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 25.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 25.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 24.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 24.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 24.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 24.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 24.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 23.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 23.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 23.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 23.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 23.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 23.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 23.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 22.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 22.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 22.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 22.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 21.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 21.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 21.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 20.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 20.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 20.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 19.9
GTEX-1192X-2526-SM-59868 50-59 years, male 19.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 19.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 19.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 19.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 19.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 18.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 17.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 17.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 17.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 17.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 17.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 17.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 16.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 16.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 15.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 15.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 14.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 14.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 12.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

122.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 122.2
FF:10024-101D6 15,40,85 years, mixed 122.2

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