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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:203.5 nTPM
GTEx:203.5 nTPM
FANTOM5:255.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049250
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 203.5
Samples: 156

Max nTPM: 405.1
Min nTPM: 114.1
Std nTPM: 45.0
Median nTPM: 199.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 405.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 350.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 333.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 308.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 302.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 300.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 296.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 294.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 291.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 287.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 281.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 263.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 263.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 262.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 262.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 261.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 257.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 251.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 248.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 248.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 247.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 246.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 245.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 244.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 243.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 240.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 239.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 235.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 235.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 233.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 232.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 229.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 228.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 228.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 227.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 226.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 225.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 225.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 222.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 221.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 221.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 221.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 221.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 220.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 220.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 219.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 218.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 218.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 218.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 217.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 216.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 216.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 216.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 215.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 215.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 213.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 213.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 213.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 212.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 212.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 210.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 209.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 209.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 208.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 208.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 206.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 206.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 206.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 205.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 204.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 203.7
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 203.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 203.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 203.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 201.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 201.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 199.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 199.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 198.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 198.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 198.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 198.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 198.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 197.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 196.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 196.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 194.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 193.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 193.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 192.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 190.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 190.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 189.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 189.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 189.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 188.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 186.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 186.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 186.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 185.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 184.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 183.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 183.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 182.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 181.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 181.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 181.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 180.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 179.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 178.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 177.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 175.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 175.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 174.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 173.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 172.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 172.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 171.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 171.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 171.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 170.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 169.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 168.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 168.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 166.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 166.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 166.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 166.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 165.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 162.9
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 161.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 161.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 160.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 158.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 157.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 156.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 156.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 154.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 154.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 154.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 151.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 150.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 149.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 149.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 147.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 145.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 145.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 145.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 144.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 143.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 142.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 132.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 125.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 124.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 119.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 114.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

255.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 255.6
FF:10204-103F6 68 years, female 255.6

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