MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.8 nTPM
HPA Brain:194.2 nTPM
GTEx:62.8 nTPM
FANTOM5:71.2 Scaled Tags Per Million
Pig:84.4 nTPM
Mouse:114.7 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 194.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 159.4
2586 Male, age 75, left hemisphere 217.7
2019 Male, age 18, unknown 165.3
2828 Female, age 72, unknown 163.2
2666 Male, age 74, left hemisphere 159.2
1827 Male, age 72, unknown 157.0
2219 Male, age 76, both hemispheres 152.8
2411 Female, age 72, unknown 150.8
1833 Male, age 53, unknown 145.1
1830 Male, age 51, unknown 144.9
1870 Female, age 42, unknown 138.1
Dorsal raphe nucleus
nTPM: 138.5
1828 Male, age 53, unknown 152.9
2047 Male, age 72, unknown 144.3
2750 Male, age 76, both hemispheres 141.7
2298 Female, age 72, unknown 127.8
2016 Female, age 72, unknown 125.9
Inferior colliculus
nTPM: 135.0
1848 Female, age 42, unknown 142.0
2849 Male, age 72, unknown 141.5
1890 Male, age 53, unknown 131.6
2097 Female, age 72, unknown 125.1
Median raphe nucleus
nTPM: 128.3
2220 Male, age 76, midline 128.3
Periaquaductal grey, anterior
nTPM: 161.6
2502 Female, age 75, unknown 187.2
1947 Male, age 18, unknown 151.4
1795 Male, age 51, unknown 146.1
Periaquaductal grey, dorsal
nTPM: 122.1
2464 Female, age 72, unknown 146.9
1840 Male, age 53, unknown 131.8
1831 Male, age 72, unknown 112.9
2850 Male, age 76, both hemispheres 96.6
Periaquaductal grey, lateral
nTPM: 110.8
2053 Male, age 18, unknown 121.5
2140 Male, age 76, both hemispheres 109.4
2272 Male, age 74, both hemispheres 101.4
Pretectal area
nTPM: 151.3
1944 Female, age 72, unknown 190.4
1816 Male, age 51, unknown 183.0
2007 Male, age 72, unknown 180.6
2667 Female, age 75, unknown 173.4
1817 Female, age 42, unknown 155.5
1815 Male, age 53, unknown 151.3
2407 Male, age 75, both hemispheres 145.3
2825 Male, age 18, unknown 135.9
2224 Female, age 72, unknown 126.8
2316 Male, age 76, right hemisphere 125.7
2273 Male, age 74, both hemispheres 96.4
Red nucleus
nTPM: 151.3
2588 Male, age 74, left hemisphere 170.3
2584 Male, age 75, left hemisphere 166.2
2823 Male, age 76, right hemisphere 161.9
2769 Male, age 72, unknown 154.6
2785 Male, age 18, unknown 154.6
2227 Male, age 72, unknown 151.3
1865 Male, age 51, unknown 150.4
1904 Male, age 53, unknown 148.3
1821 Female, age 72, unknown 145.9
2503 Female, age 72, unknown 145.3
1954 Female, age 42, unknown 141.3
2725 Female, age 75, unknown 125.4
Substantia nigra
nTPM: 194.2
1916 Female, age 42, unknown 284.6
1941 Male, age 53, unknown 218.8
2665 Male, age 74, both hemispheres 210.7
1851 Male, age 51, unknown 205.4
2241 Male, age 72, unknown 186.4
2409 Female, age 72, unknown 181.6
2699 Male, age 18, unknown 180.7
2583 Male, age 75, right hemisphere 167.2
1889 Female, age 72, unknown 164.0
2590 Female, age 75, unknown 142.8
Superior colliculus
nTPM: 151.8
2087 Female, age 72, unknown 184.4
2664 Male, age 75, both hemispheres 178.9
2668 Female, age 75, unknown 177.6
2261 Male, age 18, unknown 156.6
1895 Male, age 76, right hemisphere 152.5
1796 Male, age 53, unknown 149.1
1839 Male, age 51, unknown 139.3
2587 Male, age 74, left hemisphere 129.5
1913 Female, age 42, unknown 128.8
1995 Male, age 72, unknown 120.9
Ventral tegmental area
nTPM: 158.2
1915 Female, age 42, unknown 192.2
2410 Female, age 72, unknown 184.0
2218 Male, age 76, both hemispheres 168.9
1942 Male, age 51, unknown 152.9
2021 Male, age 53, unknown 126.6
2223 Female, age 72, unknown 124.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.8
Samples: 139

Max nTPM: 131.2
Min nTPM: 27.1
Std nTPM: 19.3
Median nTPM: 61.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 131.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 122.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 118.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 110.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 105.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 99.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 93.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 92.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 92.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 91.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 91.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.2
FF:10158-103A5 76 years, female 71.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.4
Samples: 4

Max nTPM: 110.4
Min nTPM: 51.9
Sample A Female 92.3
Sample B Female 51.9
Sample C Male 110.4
Sample D Male 58.9
Midbrain
nTPM: 78.4
Samples: 4

Max nTPM: 120.5
Min nTPM: 49.1
Sample A Female 49.1
Sample B Female 60.1
Sample C Male 120.5
Sample D Male 83.8
Periaqueductal gray
nTPM: 60.2
Samples: 3

Max nTPM: 72.6
Min nTPM: 52.5
Sample B Female 55.6
Sample C Male 72.6
Sample D Male 52.5
Superior colliculi
nTPM: 84.4
Samples: 4

Max nTPM: 115.0
Min nTPM: 53.4
Sample A Female 75.2
Sample B Female 53.4
Sample C Male 115.0
Sample D Male 93.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 114.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.8
Samples: 4

Max nTPM: 121.3
Min nTPM: 112.4
Sample A Male 112.4
Sample B Male 112.5
Sample C Female 121.3
Sample D Female 112.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
74749970 Antisense, RP_060220_04_F08, Mouse strain C57BL/6J (56 days, male) 8.1
70191937 Antisense, RP_050512_04_H08, Mouse strain C57BL/6J (56 days, male) 7.7

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