BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:151.4 nTPM
HPA Brain:99.8 nTPM
GTEx:151.4 nTPM
FANTOM5:70.7 Scaled Tags Per Million
Pig:62.1 nTPM
Mouse:128.8 nTPM
Allen mouse:11.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031821
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 99.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 98.3
2481 Female, age 94, left hemisphere 116.7
2290 Female, age 72, unknown 108.7
2288 Male, age 75, left hemisphere 98.5
1781 Male, age 74, unknown 98.0
1857 Female, age 85, left hemisphere 96.6
1854 Male, age 80, left hemisphere 91.7
2846 Female, age 79, unknown 91.0
2289 Male, age 61, right hemisphere 85.1
Globus pallidus, externus
nTPM: 99.8
2772 Female, age 79, unknown 118.9
2646 Male, age 61, right hemisphere 116.0
1996 Male, age 80, right hemisphere 103.6
2395 Male, age 75, both hemispheres 92.8
2567 Female, age 72, unknown 67.8
Globus pallidus, internus
nTPM: 92.5
2483 Female, age 94, right hemisphere 126.2
2287 Male, age 75, right hemisphere 119.5
1818 Male, age 74, unknown 92.9
2778 Female, age 91, both hemispheres 85.9
2037 Male, age 80, right hemisphere 82.6
2111 Female, age 85, right hemisphere 70.4
2566 Female, age 72, unknown 69.7
Nucleus accumbens
nTPM: 96.3
1856 Female, age 91, right hemisphere 110.6
1806 Female, age 85, left hemisphere 109.2
1783 Male, age 74, unknown 105.6
2286 Male, age 75, left hemisphere 104.4
2824 Male, age 61, right hemisphere 91.6
2698 Female, age 72, unknown 89.8
2391 Female, age 94, left hemisphere 82.4
2732 Male, age 80, right hemisphere 77.1
Nucleus basalis of Meynert
nTPM: 91.3
2569 Male, age 61, both hemispheres 119.0
2484 Female, age 94, left hemisphere 88.2
2393 Male, age 80, right hemisphere 80.6
2821 Male, age 75, both hemispheres 77.5
Nucleus of the diagonal band
nTPM: 88.4
1812 Female, age 91, both hemispheres 100.5
2775 Male, age 80, right hemisphere 98.9
2195 Female, age 85, both hemispheres 88.0
1979 Male, age 74, unknown 80.2
2029 Male, age 61, right hemisphere 74.5
Putamen
nTPM: 92.3
2482 Female, age 94, left hemisphere 101.3
2647 Male, age 75, left hemisphere 100.3
1937 Female, age 91, right hemisphere 99.2
2466 Female, age 79, unknown 99.2
1838 Male, age 80, right hemisphere 89.5
1829 Male, age 74, unknown 83.1
2489 Female, age 72, unknown 73.5
Septal nuclei
nTPM: 83.2
1960 Male, age 74, unknown 109.2
2031 Female, age 72, unknown 97.0
2059 Female, age 85, both hemispheres 90.6
2009 Female, age 91, both hemispheres 84.0
2199 Male, age 80, right hemisphere 71.8
2394 Male, age 61, left hemisphere 65.4
2629 Female, age 94, right hemisphere 64.8
Stria terminalis, bed nucleus
nTPM: 81.2
1974 Female, age 91, both hemispheres 98.5
2486 Female, age 94, both hemispheres 73.0
2201 Male, age 74, unknown 72.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 151.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 132.2
Samples: 246

Max nTPM: 287.6
Min nTPM: 54.8
Std nTPM: 36.3
Median nTPM: 124.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 287.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 283.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 265.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 247.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 228.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 225.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 224.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 223.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 215.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 213.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 208.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 142.5
Samples: 246

Max nTPM: 367.7
Min nTPM: 66.3
Std nTPM: 44.4
Median nTPM: 136.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 367.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 319.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 300.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 283.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 275.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 268.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 266.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 255.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 254.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 226.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 224.2
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Brain - Putamen (basal ganglia)
Average nTPM: 151.4
Samples: 205

Max nTPM: 292.9
Min nTPM: 69.7
Std nTPM: 36.4
Median nTPM: 149.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 292.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 267.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 249.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 248.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 243.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 241.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 226.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 222.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 222.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 222.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 221.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.7
FF:10164-103B2 76 years, female 52.7
Nucleus accumbens
Scaled Tags Per Million: 70.7
FF:10037-101F1 23-56 years, mixed 70.7
Putamen
Scaled Tags Per Million: 67.2
FF:10176-103C5 60 years, female 67.2
Globus pallidus
Scaled Tags Per Million: 57.2
FF:10175-103C4 60 years, female 72.1
FF:10161-103A8 76 years, female 42.3

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 62.1
Pig sample Sample description nTPM
Caudate
nTPM: 54.4
Samples: 4

Max nTPM: 63.6
Min nTPM: 46.1
Sample A Female 46.1
Sample B Female 61.1
Sample C Male 63.6
Sample D Male 46.8
Putamen
nTPM: 62.1
Samples: 4

Max nTPM: 82.3
Min nTPM: 48.8
Sample A Female 51.3
Sample B Female 48.8
Sample C Male 82.3
Sample D Male 66.1
Septum
nTPM: 50.2
Samples: 4

Max nTPM: 54.7
Min nTPM: 47.6
Sample A Female 54.7
Sample B Female 49.1
Sample C Male 49.2
Sample D Male 47.6
Ventral pallidum
nTPM: 50.2
Samples: 4

Max nTPM: 57.9
Min nTPM: 43.7
Sample A Female 46.3
Sample B Female 57.9
Sample C Male 52.9
Sample D Male 43.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 128.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 111.7
Samples: 4

Max nTPM: 118.5
Min nTPM: 107.1
Sample A Male 107.1
Sample B Male 118.5
Sample C Female 111.1
Sample D Female 110.2
Septum
nTPM: 128.8
Samples: 4

Max nTPM: 140.5
Min nTPM: 115.1
Sample A Male 120.8
Sample B Male 140.5
Sample C Female 138.6
Sample D Female 115.1
Ventral forebrain
nTPM: 125.0
Samples: 4

Max nTPM: 142.3
Min nTPM: 118.1
Sample A Male 120.6
Sample B Male 119.0
Sample C Female 142.3
Sample D Female 118.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 11.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.2
576434 Antisense, RP_040826_01_H10, Mouse strain C57BL/6J (56 days, male) 19.0
81599658 Antisense, RP_071213_04_B03, Mouse strain C57BL/6J (56 days, male) 3.4
Pallidum
Expression energy: 11.1
576434 Antisense, RP_040826_01_H10, Mouse strain C57BL/6J (56 days, male) 18.9
81599658 Antisense, RP_071213_04_B03, Mouse strain C57BL/6J (56 days, male) 3.2

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