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TTLL11
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:8.7 nTPM
HPA Brain:48.5 nTPM
GTEx:8.7 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:8.7 nTPM
Mouse:22.8 nTPM
Allen mouse:0.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.5
Sample id Sample description nTPM
Amygdala
nTPM: 36.8
2695 Female, age 67, right hemisphere 51.1
2814 Male, age 76, right hemisphere 45.6
2514 Male, age 75, right hemisphere 33.4
2517 Female, age 94, left hemisphere 29.6
1987 Female, age 91, left hemisphere 24.3
Basal amygdala
nTPM: 40.6
2827 Female, age 67, right hemisphere 78.0
2685 Female, age 94, left hemisphere 35.9
1955 Male, age 76, both hemispheres 35.3
2609 Male, age 75, right hemisphere 33.5
2110 Male, age 80, left hemisphere 32.2
2243 Female, age 91, right hemisphere 28.5
Central amygdala
nTPM: 38.4
2826 Female, age 94, left hemisphere 55.1
1905 Male, age 76, both hemispheres 41.8
2701 Female, age 91, right hemisphere 32.4
2515 Male, age 75, right hemisphere 31.9
2239 Male, age 80, left hemisphere 30.8
Corticomedial amygdala
nTPM: 33.3
2535 Female, age 67, right hemisphere 49.5
2240 Male, age 76, both hemispheres 36.9
2429 Female, age 94, left hemisphere 35.6
2428 Male, age 75, right hemisphere 29.6
2829 Male, age 80, left hemisphere 27.1
2242 Female, age 91, right hemisphere 20.9
Lateral amygdala
nTPM: 48.5
2830 Female, age 67, right hemisphere 101.2
2516 Male, age 75, right hemisphere 41.6
2534 Female, age 94, left hemisphere 40.8
2256 Male, age 80, left hemisphere 37.1
1883 Male, age 76, both hemispheres 35.5
2255 Female, age 91, right hemisphere 34.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 8.7
Samples: 152

Max nTPM: 32.0
Min nTPM: 1.9
Std nTPM: 5.1
Median nTPM: 7.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 32.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 24.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 23.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 21.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 21.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 19.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 19.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 19.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 19.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 18.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 18.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 17.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 17.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 16.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 16.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 15.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 15.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 15.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 14.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 14.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 14.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 14.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 14.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 13.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 13.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 13.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 12.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 12.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 12.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 12.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 12.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 12.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 11.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 11.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 11.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 10.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 10.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 10.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 10.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 10.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 10.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 10.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 10.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 10.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 10.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 9.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 9.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 9.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 9.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 9.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 9.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 9.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 9.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 8.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 8.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 8.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 8.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 8.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 8.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 8.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 8.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 8.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 8.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 7.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 7.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 7.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 7.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 7.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 7.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 7.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 7.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 7.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 7.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 7.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 6.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 6.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 6.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 6.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 6.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 6.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 6.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 6.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 6.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 6.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 6.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 6.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 6.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 6.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 6.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 5.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 5.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 5.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 5.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 5.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 5.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 5.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 5.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 5.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 5.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 5.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 5.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 5.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 5.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 5.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 5.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 5.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 5.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 5.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 5.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 4.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 4.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 4.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 4.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 4.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 4.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 4.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 4.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 4.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 4.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 4.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 4.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 4.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 4.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 4.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 4.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 4.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 4.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 3.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 3.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 3.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 3.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 3.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 3.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 2.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 36.9
FF:10151-102I7 76 years, female 36.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.7
Pig sample Sample description nTPM
Amygdala
nTPM: 8.8
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.6
Sample A Female 8.5
Sample B Female 9.1
Sample C Male 9.8
Sample D Male 7.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 22.9
Samples: 4

Max nTPM: 24.4
Min nTPM: 20.3
Sample A Male 20.3
Sample B Male 22.8
Sample C Female 23.9
Sample D Female 24.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.5
71919026 Antisense, RP_051012_01_H03, Mouse strain C57BL/6J (56 days, male) 0.5

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