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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:76.9 nTPM
HPA Brain:33.3 nTPM
GTEx:76.9 nTPM
FANTOM5:63.5 Scaled Tags Per Million
Pig:113.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.3
Sample id Sample description nTPM
Amygdala
nTPM: 33.3
2814 Male, age 76, right hemisphere 47.9
1987 Female, age 91, left hemisphere 31.6
2695 Female, age 67, right hemisphere 31.6
2514 Male, age 75, right hemisphere 30.6
2517 Female, age 94, left hemisphere 24.9
Basal amygdala
nTPM: 26.0
1955 Male, age 76, both hemispheres 34.2
2609 Male, age 75, right hemisphere 28.5
2685 Female, age 94, left hemisphere 27.3
2110 Male, age 80, left hemisphere 25.7
2243 Female, age 91, right hemisphere 23.7
2827 Female, age 67, right hemisphere 16.8
Central amygdala
nTPM: 29.4
1905 Male, age 76, both hemispheres 40.4
2515 Male, age 75, right hemisphere 31.0
2826 Female, age 94, left hemisphere 26.5
2239 Male, age 80, left hemisphere 24.8
2701 Female, age 91, right hemisphere 24.2
Corticomedial amygdala
nTPM: 26.8
2240 Male, age 76, both hemispheres 30.8
2429 Female, age 94, left hemisphere 29.5
2829 Male, age 80, left hemisphere 29.0
2242 Female, age 91, right hemisphere 25.4
2428 Male, age 75, right hemisphere 25.1
2535 Female, age 67, right hemisphere 21.2
Lateral amygdala
nTPM: 25.2
1883 Male, age 76, both hemispheres 39.9
2534 Female, age 94, left hemisphere 27.9
2516 Male, age 75, right hemisphere 27.8
2256 Male, age 80, left hemisphere 21.2
2255 Female, age 91, right hemisphere 19.6
2830 Female, age 67, right hemisphere 15.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 76.9
Samples: 152

Max nTPM: 274.5
Min nTPM: 45.2
Std nTPM: 26.6
Median nTPM: 71.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 274.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 167.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 165.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 165.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 144.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 126.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 122.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 120.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 113.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 111.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 106.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 105.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 102.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 101.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 100.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 100.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 95.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 92.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 92.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 92.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 91.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 90.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 90.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 89.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 89.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 88.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 88.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 87.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 86.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 86.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 85.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 85.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 84.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 81.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 81.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 81.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 80.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 80.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 80.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 79.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 79.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 79.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 79.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 78.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 78.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 78.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 77.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 77.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 76.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 76.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 76.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 76.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 75.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 75.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 74.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 74.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 74.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 73.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 73.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 73.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 72.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 72.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 72.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 72.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 72.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 71.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 71.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 71.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 71.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 70.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 70.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 70.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 69.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 69.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 69.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 68.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 68.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 67.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 67.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 67.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 67.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 67.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 67.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 66.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 66.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 66.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 66.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 65.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 65.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 65.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 65.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 64.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 64.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 64.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 63.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 62.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 62.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 62.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 62.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 61.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 61.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 61.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 61.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 60.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 60.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 60.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 60.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 59.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 59.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 59.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 59.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 59.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 59.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 58.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 58.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 58.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 57.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 57.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 56.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 56.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 56.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 56.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 55.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 55.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 53.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 52.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 52.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 52.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 51.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 50.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 50.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 49.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 45.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 45.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 63.5
FF:10151-102I7 76 years, female 63.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.7
Pig sample Sample description nTPM
Amygdala
nTPM: 113.7
Samples: 4

Max nTPM: 147.5
Min nTPM: 83.8
Sample A Female 147.5
Sample B Female 125.4
Sample C Male 98.1
Sample D Male 83.8

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