MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.7 nTPM
HPA Brain:159.2 nTPM
GTEx:102.7 nTPM
FANTOM5:194.1 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:6.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 159.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.9
2666 Male, age 74, left hemisphere 170.7
2019 Male, age 18, unknown 158.2
2828 Female, age 72, unknown 141.8
1870 Female, age 42, unknown 140.1
1830 Male, age 51, unknown 135.9
1833 Male, age 53, unknown 131.1
2219 Male, age 76, both hemispheres 126.3
2411 Female, age 72, unknown 125.9
1827 Male, age 72, unknown 94.6
2586 Male, age 75, left hemisphere 54.5
Dorsal raphe nucleus
nTPM: 132.8
2750 Male, age 76, both hemispheres 142.3
1828 Male, age 53, unknown 139.2
2298 Female, age 72, unknown 138.2
2016 Female, age 72, unknown 130.6
2047 Male, age 72, unknown 113.7
Inferior colliculus
nTPM: 127.6
2097 Female, age 72, unknown 147.8
1890 Male, age 53, unknown 145.0
1848 Female, age 42, unknown 122.2
2849 Male, age 72, unknown 95.5
Median raphe nucleus
nTPM: 106.3
2220 Male, age 76, midline 106.3
Periaquaductal grey, anterior
nTPM: 118.3
2502 Female, age 75, unknown 137.9
1947 Male, age 18, unknown 120.0
1795 Male, age 51, unknown 96.9
Periaquaductal grey, dorsal
nTPM: 110.8
1831 Male, age 72, unknown 138.2
2464 Female, age 72, unknown 120.4
2850 Male, age 76, both hemispheres 92.8
1840 Male, age 53, unknown 91.7
Periaquaductal grey, lateral
nTPM: 116.0
2272 Male, age 74, both hemispheres 129.3
2053 Male, age 18, unknown 116.9
2140 Male, age 76, both hemispheres 101.8
Pretectal area
nTPM: 115.1
1817 Female, age 42, unknown 164.0
2007 Male, age 72, unknown 134.6
2316 Male, age 76, right hemisphere 128.8
1815 Male, age 53, unknown 127.4
2224 Female, age 72, unknown 116.0
1944 Female, age 72, unknown 111.1
2667 Female, age 75, unknown 110.6
2273 Male, age 74, both hemispheres 108.7
2825 Male, age 18, unknown 97.5
1816 Male, age 51, unknown 95.6
2407 Male, age 75, both hemispheres 71.4
Red nucleus
nTPM: 159.2
1954 Female, age 42, unknown 211.3
2823 Male, age 76, right hemisphere 182.2
1821 Female, age 72, unknown 181.7
1865 Male, age 51, unknown 181.0
1904 Male, age 53, unknown 180.1
2503 Female, age 72, unknown 172.4
2769 Male, age 72, unknown 165.3
2227 Male, age 72, unknown 158.7
2785 Male, age 18, unknown 145.0
2588 Male, age 74, left hemisphere 132.9
2725 Female, age 75, unknown 123.5
2584 Male, age 75, left hemisphere 76.7
Substantia nigra
nTPM: 159.1
2665 Male, age 74, both hemispheres 265.5
2409 Female, age 72, unknown 176.4
2241 Male, age 72, unknown 169.9
2699 Male, age 18, unknown 169.5
1851 Male, age 51, unknown 162.1
2590 Female, age 75, unknown 156.0
1916 Female, age 42, unknown 142.9
1941 Male, age 53, unknown 124.0
1889 Female, age 72, unknown 121.6
2583 Male, age 75, right hemisphere 103.5
Superior colliculus
nTPM: 117.8
2587 Male, age 74, left hemisphere 169.9
1913 Female, age 42, unknown 147.5
2087 Female, age 72, unknown 132.0
1995 Male, age 72, unknown 123.8
1895 Male, age 76, right hemisphere 123.2
2668 Female, age 75, unknown 121.6
1839 Male, age 51, unknown 118.7
2261 Male, age 18, unknown 95.2
1796 Male, age 53, unknown 88.4
2664 Male, age 75, both hemispheres 57.1
Ventral tegmental area
nTPM: 144.6
2410 Female, age 72, unknown 162.0
2021 Male, age 53, unknown 160.5
2218 Male, age 76, both hemispheres 145.5
1942 Male, age 51, unknown 143.9
2223 Female, age 72, unknown 133.1
1915 Female, age 42, unknown 122.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 102.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.7
Samples: 139

Max nTPM: 245.1
Min nTPM: 22.9
Std nTPM: 44.6
Median nTPM: 97.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 245.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 241.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 236.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 233.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 221.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 218.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 215.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 210.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 188.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 176.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 172.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 194.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 194.1
FF:10158-103A5 76 years, female 194.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.0
Samples: 4

Max nTPM: 29.2
Min nTPM: 22.6
Sample A Female 28.4
Sample B Female 29.2
Sample C Male 22.6
Sample D Male 23.7
Midbrain
nTPM: 19.3
Samples: 4

Max nTPM: 36.2
Min nTPM: 8.3
Sample A Female 36.2
Sample B Female 23.8
Sample C Male 8.3
Sample D Male 8.8
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 32.3
Min nTPM: 19.9
Sample B Female 23.8
Sample C Male 32.3
Sample D Male 19.9
Superior colliculi
nTPM: 12.5
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.8
Sample A Female 14.2
Sample B Female 10.8
Sample C Male 11.4
Sample D Male 13.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.8
Sample A Male 6.5
Sample B Male 5.8
Sample C Female 7.4
Sample D Female 6.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100146086 Antisense, RP_110519_03_F07, Mouse strain C57BL/6J (56 days, male) 0.1

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