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HSD11B2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:138.0 nTPM
HPA:84.2 nTPM
GTEx:138.0 nTPM
FANTOM5:225.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042186Antibody HPA056385Antibody CAB032443
Endocrine cells -High-
Enterocytes -Medium-
Enterocytes - Microvilli -Not detected-
Glandular cells Low-High
Goblet cells -High-
Paneth cells -Not detected-







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.2
overview
Male, age 65
Small intestine sample 232
nTPM: 55.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 156.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 68.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 55.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 138.0
Samples: 187

Max nTPM: 606.0
Min nTPM: 0.3
Std nTPM: 150.9
Median nTPM: 79.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 606.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 591.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 556.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 529.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 520.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 508.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 481.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 447.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 421.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 418.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 417.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 411.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 402.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 395.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 393.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 392.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 391.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 390.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 383.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 380.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 377.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 371.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 368.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 362.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 355.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 351.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 343.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 338.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 333.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 329.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 328.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 310.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 308.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 306.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 305.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 297.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 288.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 272.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 263.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 250.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 250.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 239.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 227.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 225.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 225.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 224.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 222.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 221.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 220.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 217.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 213.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 210.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 205.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 203.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 196.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 195.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 189.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 186.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 180.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 179.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 167.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 166.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 161.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 158.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 158.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 154.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 150.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 149.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 149.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 147.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 143.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 141.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 138.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 138.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 132.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 131.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 130.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 121.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 118.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 108.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 104.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 101.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 99.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 96.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 96.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 94.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 93.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 92.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 92.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 91.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 90.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 89.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 83.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 79.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 74.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 71.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 69.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 68.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 66.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 64.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 61.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 58.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 54.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 53.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 52.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 51.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 50.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 48.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 48.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 47.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 46.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 45.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 43.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 42.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 38.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 37.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 35.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 33.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 33.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 33.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 32.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 28.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 28.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 28.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 28.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 27.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 24.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 23.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 18.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 16.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 16.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 15.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 14.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 13.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 12.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 12.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 12.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 12.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 11.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 11.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 10.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 10.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 9.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 7.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 7.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 6.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 6.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 6.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 6.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 5.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 5.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 4.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 4.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 4.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 4.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 3.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 3.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 3.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 3.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.7
GTEX-1192X-2526-SM-59868 50-59 years, male 1.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

225.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 225.4
FF:10024-101D6 15,40,85 years, mixed 225.4

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