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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.5
Sample id
Sample description
nTPM
Amygdala nTPM: 57.1
2814
Male, age 76, right hemisphere
74.9
2517
Female, age 94, left hemisphere
59.3
1987
Female, age 91, left hemisphere
55.1
2695
Female, age 67, right hemisphere
51.4
2514
Male, age 75, right hemisphere
45.1
Basal amygdala nTPM: 70.5
2685
Female, age 94, left hemisphere
84.9
2243
Female, age 91, right hemisphere
77.8
1955
Male, age 76, both hemispheres
77.3
2827
Female, age 67, right hemisphere
68.3
2110
Male, age 80, left hemisphere
67.4
2609
Male, age 75, right hemisphere
47.3
Central amygdala nTPM: 66.6
1905
Male, age 76, both hemispheres
80.9
2239
Male, age 80, left hemisphere
70.0
2701
Female, age 91, right hemisphere
67.4
2826
Female, age 94, left hemisphere
64.4
2515
Male, age 75, right hemisphere
50.3
Corticomedial amygdala nTPM: 68.1
2240
Male, age 76, both hemispheres
83.0
2429
Female, age 94, left hemisphere
82.6
2535
Female, age 67, right hemisphere
70.2
2829
Male, age 80, left hemisphere
63.0
2242
Female, age 91, right hemisphere
60.4
2428
Male, age 75, right hemisphere
49.4
Lateral amygdala nTPM: 64.1
2534
Female, age 94, left hemisphere
79.9
1883
Male, age 76, both hemispheres
76.6
2255
Female, age 91, right hemisphere
70.9
2256
Male, age 80, left hemisphere
63.0
2830
Female, age 67, right hemisphere
51.8
2516
Male, age 75, right hemisphere
42.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 48.1
Samples: 152
Max nTPM: 157.8
Min nTPM: 2.0
Std nTPM: 23.3
Median nTPM: 44.6
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
157.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
146.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
126.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
104.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
102.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
95.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
83.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
81.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
80.5
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
79.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
79.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
76.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
76.0
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
75.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
75.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
74.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
74.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
71.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
71.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
70.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
70.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
69.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
69.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
69.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
68.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
68.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
67.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
66.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
66.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
63.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
62.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
62.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
61.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
61.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
60.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
60.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
60.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
59.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
58.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
57.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
57.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
57.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
56.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
55.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
55.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
54.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
54.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
53.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
53.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
53.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
53.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
53.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
53.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
52.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
52.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
51.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
51.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
51.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
51.5
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
51.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
50.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
50.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
50.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
50.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
50.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
49.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
49.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
49.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
48.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
47.4
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
47.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
46.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
45.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
45.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
45.5
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
44.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
44.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
44.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
43.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
43.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
43.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
43.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
42.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
42.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
42.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
41.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
41.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
40.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
40.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
40.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
40.3
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
40.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
40.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
39.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
39.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
38.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
38.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
37.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
37.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
37.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
37.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
36.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
36.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
36.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
36.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
36.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
35.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
35.4
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
35.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
34.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
34.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
34.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
34.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
33.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
33.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
33.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
32.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
32.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
30.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
30.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
30.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
30.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
30.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
29.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
28.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
27.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
27.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
27.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
27.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
26.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
26.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
26.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
26.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
26.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
25.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
24.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
23.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
22.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
22.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
21.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
20.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
20.3
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
19.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
18.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
18.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
17.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
13.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
12.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
12.1
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
6.7
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
6.2
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
2.0
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 52.9
Samples: 4
Max nTPM: 61.0
Min nTPM: 48.7
Sample A
Male
50.7
Sample B
Male
51.1
Sample C
Female
61.0
Sample D
Female
48.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
