We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RHOG
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RHOG
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:124.4 nTPM
HPA Brain:98.6 nTPM
GTEx:124.4 nTPM
FANTOM5:200.5 Scaled Tags Per Million
Pig:116.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 90.2
1981 Female, age 72, midline 104.3
2194 Female, age 79, both hemispheres 95.8
2048 Male, age 55, midline 92.5
2816 Male, age 47, midline 85.9
2565 Male, age 75, midline 72.6
Cervical spinal cord, dorsal horn
nTPM: 98.0
2173 Female, age 72, unknown 126.8
2296 Male, age 66, both hemispheres 126.1
1877 Male, age 55, unknown 103.8
2069 Male, age 47, both hemispheres 100.4
2721 Male, age 90, both hemispheres 69.8
2297 Male, age 75, both hemispheres 60.9
Cervical spinal cord, ventral horn
nTPM: 98.6
2068 Male, age 55, unknown 109.6
2098 Female, age 72, unknown 101.4
2480 Male, age 75, both hemispheres 100.7
2809 Male, age 90, both hemispheres 100.3
2820 Female, age 79, both hemispheres 91.3
2295 Male, age 66, both hemispheres 88.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 124.4
Samples: 159

Max nTPM: 302.3
Min nTPM: 41.7
Std nTPM: 38.4
Median nTPM: 119.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 302.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 221.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 221.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 215.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 202.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 200.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 193.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 190.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 189.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 189.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 185.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 183.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 179.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 177.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 175.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 175.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 175.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 172.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 169.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 166.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 165.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 162.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 160.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 158.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 156.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 156.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 156.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 156.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 155.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 154.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 153.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 153.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 151.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 151.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 150.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 149.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 148.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 147.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 147.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 147.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 145.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 144.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 144.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 143.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 143.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 142.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 140.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 140.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 140.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 139.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 138.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 136.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 136.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 136.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 135.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 135.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 134.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 134.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 134.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 134.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 133.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 132.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 132.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 132.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 132.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 130.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 129.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 129.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 127.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 126.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 123.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 122.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 122.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 122.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 121.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 121.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 121.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 119.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 119.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 118.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 117.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 117.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 117.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 116.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 115.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 115.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 115.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 115.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 114.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 114.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 113.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 112.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 111.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 111.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 111.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 111.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 109.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 107.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 107.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 107.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 107.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 105.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 105.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 105.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 105.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 105.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 104.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 104.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 102.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 101.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 101.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 101.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 101.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 101.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 100.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 99.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 99.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 98.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 98.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 98.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 96.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 94.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 94.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 93.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 92.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 90.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 90.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 90.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 89.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 89.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 87.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 87.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 86.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 86.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 85.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 84.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 79.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 77.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 77.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 76.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 73.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 71.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 68.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 66.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 63.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 62.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 46.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 41.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 200.5
FF:10181-103D1 60 years, female 262.2
FF:10159-103A6 76 years, female 138.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 96.7
Samples: 4

Max nTPM: 99.9
Min nTPM: 91.3
Sample A Female 91.3
Sample B Female 99.9
Sample C Male 96.5
Sample D Male 98.9
Ventral spinal cord
nTPM: 117.0
Samples: 4

Max nTPM: 128.5
Min nTPM: 99.4
Sample A Female 125.5
Sample B Female 99.4
Sample C Male 114.4
Sample D Male 128.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org