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GATD1
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  • GATD1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GATD1
Synonyms FLJ34283, PDDC1
Gene descriptioni

Full gene name according to HGNC.

Glutamine amidotransferase class 1 domain containing 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Secreted, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband p15.5
Chromosome location (bp) 767220 - 777488
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000177225 (version 109)
Entrez gene 347862
HGNC HGNC:26616
UniProt Q8NB37 (UniProt - Evidence at protein level)
neXtProt NX_Q8NB37
GeneCards GATD1
Antibodypedia GATD1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Component of the FERRY complex (Five-subunit Endosomal Rab5 and RNA/ribosome intermediary) 1, 2. The FERRY complex directly interacts with mRNAs and RAB5A, and functions as a RAB5A effector involved in the localization and the distribution of specific mRNAs most likely by mediating their endosomal transport. The complex recruits mRNAs and ribosomes to early endosomes through direct mRNA-interaction 3.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Located in extracellular exosome. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GATD1-201
ENSP00000321691
ENST00000319863
Q8NB37
[Direct mapping] Glutamine amidotransferase-like class 1 domain-containing protein 1
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003674 [molecular_function]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0008150 [biological_process]
GO:0019172 [glyoxalase III activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0019249 [lactate biosynthetic process]
GO:0070062 [extracellular exosome]
Show all
220 aa
23.3 kDa
No 0
GATD1-203
ENSP00000380612
ENST00000397472
Q8NB37
[Direct mapping] Glutamine amidotransferase-like class 1 domain-containing protein 1
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003674 [molecular_function]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0008150 [biological_process]
GO:0019172 [glyoxalase III activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0019249 [lactate biosynthetic process]
GO:0070062 [extracellular exosome]
Show all
250 aa
26.8 kDa
No 0
GATD1-204
ENSP00000436417
ENST00000465313
H0YER3
[Direct mapping] Glutamine amidotransferase-like class 1 domain-containing protein 1
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
87 aa
8.9 kDa
No 0
GATD1-205
ENSP00000431183
ENST00000524550
Q8NB37
[Direct mapping] Glutamine amidotransferase-like class 1 domain-containing protein 1
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003674 [molecular_function]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0008150 [biological_process]
GO:0019172 [glyoxalase III activity]
GO:0019243 [methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione]
GO:0019249 [lactate biosynthetic process]
GO:0070062 [extracellular exosome]
Show all
184 aa
19.5 kDa
No 0
GATD1-206
ENSP00000433322
ENST00000526325
E9PLI5
[Direct mapping] Glutamine amidotransferase-like class 1 domain-containing protein 1
Show all
Predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
186 aa
19.7 kDa
No 0
GATD1-207
ENSP00000434839
ENST00000526650
H0YE25
[Direct mapping] Glutamine amidotransferase-like class 1 domain-containing protein 1
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
144 aa
15.4 kDa
No 0
GATD1-208
ENSP00000437068
ENST00000528309
H0YF25
[Direct mapping] Glutamine amidotransferase-like class 1 domain-containing protein 1
Show all
Predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
162 aa
17.3 kDa
No 0

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