MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:67.5 nTPM
GTEx:10.0 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Pig:83.9 nTPM
Mouse:49.7 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.4
2019 Male, age 18, unknown 103.0
1827 Male, age 72, unknown 62.7
2666 Male, age 74, left hemisphere 61.7
2828 Female, age 72, unknown 53.1
2219 Male, age 76, both hemispheres 52.9
2411 Female, age 72, unknown 46.6
1833 Male, age 53, unknown 45.9
2586 Male, age 75, left hemisphere 44.9
1830 Male, age 51, unknown 44.3
1870 Female, age 42, unknown 38.5
Dorsal raphe nucleus
nTPM: 32.2
1828 Male, age 53, unknown 39.0
2298 Female, age 72, unknown 33.8
2016 Female, age 72, unknown 30.3
2047 Male, age 72, unknown 29.8
2750 Male, age 76, both hemispheres 28.2
Inferior colliculus
nTPM: 67.5
2097 Female, age 72, unknown 75.9
1848 Female, age 42, unknown 75.1
1890 Male, age 53, unknown 65.1
2849 Male, age 72, unknown 53.9
Median raphe nucleus
nTPM: 21.7
2220 Male, age 76, midline 21.7
Periaquaductal grey, anterior
nTPM: 53.3
2502 Female, age 75, unknown 59.4
1947 Male, age 18, unknown 53.5
1795 Male, age 51, unknown 46.9
Periaquaductal grey, dorsal
nTPM: 37.0
2464 Female, age 72, unknown 47.9
1831 Male, age 72, unknown 41.9
1840 Male, age 53, unknown 35.3
2850 Male, age 76, both hemispheres 22.9
Periaquaductal grey, lateral
nTPM: 32.1
2053 Male, age 18, unknown 35.4
2272 Male, age 74, both hemispheres 31.3
2140 Male, age 76, both hemispheres 29.7
Pretectal area
nTPM: 66.4
1817 Female, age 42, unknown 110.0
2007 Male, age 72, unknown 106.8
1816 Male, age 51, unknown 97.3
1944 Female, age 72, unknown 90.4
1815 Male, age 53, unknown 68.8
2667 Female, age 75, unknown 64.8
2316 Male, age 76, right hemisphere 46.6
2407 Male, age 75, both hemispheres 43.9
2825 Male, age 18, unknown 35.1
2273 Male, age 74, both hemispheres 34.3
2224 Female, age 72, unknown 32.7
Red nucleus
nTPM: 62.9
1821 Female, age 72, unknown 89.6
2785 Male, age 18, unknown 81.3
2823 Male, age 76, right hemisphere 73.7
2588 Male, age 74, left hemisphere 71.9
1865 Male, age 51, unknown 66.7
1954 Female, age 42, unknown 66.1
2769 Male, age 72, unknown 58.9
2503 Female, age 72, unknown 57.3
2227 Male, age 72, unknown 56.1
1904 Male, age 53, unknown 52.8
2725 Female, age 75, unknown 50.0
2584 Male, age 75, left hemisphere 31.0
Substantia nigra
nTPM: 47.6
1889 Female, age 72, unknown 82.4
1941 Male, age 53, unknown 71.2
2665 Male, age 74, both hemispheres 49.9
1916 Female, age 42, unknown 48.1
2409 Female, age 72, unknown 41.6
1851 Male, age 51, unknown 40.7
2590 Female, age 75, unknown 40.3
2241 Male, age 72, unknown 38.2
2583 Male, age 75, right hemisphere 35.8
2699 Male, age 18, unknown 27.5
Superior colliculus
nTPM: 58.5
1895 Male, age 76, right hemisphere 100.5
2087 Female, age 72, unknown 73.5
2668 Female, age 75, unknown 64.1
2664 Male, age 75, both hemispheres 62.7
2261 Male, age 18, unknown 55.0
1839 Male, age 51, unknown 52.8
1796 Male, age 53, unknown 51.4
2587 Male, age 74, left hemisphere 42.3
1913 Female, age 42, unknown 41.6
1995 Male, age 72, unknown 40.8
Ventral tegmental area
nTPM: 35.6
2410 Female, age 72, unknown 56.7
1915 Female, age 42, unknown 39.7
2218 Male, age 76, both hemispheres 38.6
1942 Male, age 51, unknown 30.9
2223 Female, age 72, unknown 24.1
2021 Male, age 53, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.0
Samples: 139

Max nTPM: 52.6
Min nTPM: 2.2
Std nTPM: 7.6
Median nTPM: 8.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 38.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 36.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 31.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 25.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 23.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 23.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 21.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 21.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.0
FF:10158-103A5 76 years, female 11.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 42.5
Min nTPM: 16.6
Sample A Female 42.5
Sample B Female 17.5
Sample C Male 29.7
Sample D Male 16.6
Midbrain
nTPM: 54.2
Samples: 4

Max nTPM: 122.5
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 22.9
Sample C Male 122.5
Sample D Male 59.4
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 24.2
Min nTPM: 16.8
Sample B Female 22.7
Sample C Male 24.2
Sample D Male 16.8
Superior colliculi
nTPM: 83.9
Samples: 4

Max nTPM: 160.3
Min nTPM: 36.7
Sample A Female 61.5
Sample B Female 36.7
Sample C Male 160.3
Sample D Male 77.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.7
Samples: 4

Max nTPM: 60.2
Min nTPM: 34.9
Sample A Male 34.9
Sample B Male 52.7
Sample C Female 60.2
Sample D Female 51.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
69257999 Antisense, RP_050331_03_E04, Mouse strain C57BL/6J (56 days, male) 13.5
75038432 Antisense, RP_060412_04_A02, Mouse strain C57BL/6J (56 days, male) 10.4
74000564 Antisense, RP_051219_02_D02, Mouse strain C57BL/6J (56 days, male) 0.3

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