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RABEP2
HPA
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  • RABEP2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RABEP2
Synonyms FLJ23282, FRA
Gene descriptioni

Full gene name according to HGNC.

Rabaptin, RAB GTPase binding effector protein 2
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband p11.2
Chromosome location (bp) 28904421 - 28936526
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000177548 (version 109)
Entrez gene 79874
HGNC HGNC:24817
UniProt Q9H5N1 (UniProt - Evidence at protein level)
neXtProt NX_Q9H5N1
GeneCards RABEP2
Antibodypedia RABEP2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role in membrane trafficking and in homotypic early endosome fusion 1. Participates in arteriogenesis by regulating vascular endothelial growth factor receptor 2/VEGFR2 cell surface expression and endosomal trafficking 2. By interacting with SDCCAG8, localizes to centrosomes and plays a critical role in ciliogenesis 3.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cilium biogenesis/degradation, Endocytosis, Protein transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable GTPase activator activity and growth factor activity. Involved in regulation of cilium assembly. Located in cytosol; intracellular membrane-bounded organelle; and microtubule organizing center. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RABEP2-201
ENSP00000350186
ENST00000357573
Q9H5N1
[Direct mapping] Rab GTPase-binding effector protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0006897 [endocytosis]
GO:0007165 [signal transduction]
GO:0008083 [growth factor activity]
GO:0015031 [protein transport]
GO:0030030 [cell projection organization]
GO:0036064 [ciliary basal body]
GO:0042995 [cell projection]
GO:0043231 [intracellular membrane-bounded organelle]
GO:1902017 [regulation of cilium assembly]
Show all
533 aa
59.3 kDa
No 0
RABEP2-202
ENSP00000350934
ENST00000358201
Q9H5N1
[Direct mapping] Rab GTPase-binding effector protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0006897 [endocytosis]
GO:0007165 [signal transduction]
GO:0008083 [growth factor activity]
GO:0015031 [protein transport]
GO:0030030 [cell projection organization]
GO:0036064 [ciliary basal body]
GO:0042995 [cell projection]
GO:0043231 [intracellular membrane-bounded organelle]
GO:1902017 [regulation of cilium assembly]
Show all
569 aa
63.5 kDa
No 0
RABEP2-203
ENSP00000442798
ENST00000544477
B4DHR0
[Direct mapping] Rab GTPase-binding effector protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005815 [microtubule organizing center]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0006897 [endocytosis]
GO:0007165 [signal transduction]
GO:0008083 [growth factor activity]
GO:0015031 [protein transport]
GO:0030030 [cell projection organization]
GO:0042995 [cell projection]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
498 aa
56.1 kDa
No 0
RABEP2-204
ENSP00000457495
ENST00000561501
H3BU67
[Direct mapping] Rab GTPase-binding effector protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0006897 [endocytosis]
GO:0007165 [signal transduction]
GO:0008083 [growth factor activity]
Show all
72 aa
8.4 kDa
No 0
RABEP2-211
ENSP00000454974
ENST00000566762
H3BNR8
[Direct mapping] Rab GTPase-binding effector protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0006897 [endocytosis]
GO:0007165 [signal transduction]
GO:0008083 [growth factor activity]
Show all
44 aa
5.4 kDa
No 0
RABEP2-212
ENSP00000457040
ENST00000567483
H3BT64
[Direct mapping] Rab GTPase-binding effector protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005829 [cytosol]
GO:0006897 [endocytosis]
GO:0007165 [signal transduction]
GO:0008083 [growth factor activity]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
280 aa
30.2 kDa
No 0
RABEP2-213
ENSP00000454968
ENST00000568703
H3BNR2
[Direct mapping] Rab GTPase-binding effector protein 2
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005829 [cytosol]
GO:0006897 [endocytosis]
GO:0007165 [signal transduction]
GO:0008083 [growth factor activity]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
245 aa
27 kDa
No 0

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