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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:177.6 nTPM
HPA Brain:103.1 nTPM
GTEx:177.6 nTPM
FANTOM5:80.1 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 86.9
1981 Female, age 72, midline 117.5
2194 Female, age 79, both hemispheres 90.4
2565 Male, age 75, midline 80.2
2816 Male, age 47, midline 75.3
2048 Male, age 55, midline 71.3
Cervical spinal cord, dorsal horn
nTPM: 103.1
2173 Female, age 72, unknown 136.7
2069 Male, age 47, both hemispheres 124.5
2296 Male, age 66, both hemispheres 123.8
1877 Male, age 55, unknown 85.9
2297 Male, age 75, both hemispheres 79.7
2721 Male, age 90, both hemispheres 68.3
Cervical spinal cord, ventral horn
nTPM: 92.1
2098 Female, age 72, unknown 117.9
2480 Male, age 75, both hemispheres 100.0
2068 Male, age 55, unknown 93.7
2809 Male, age 90, both hemispheres 92.6
2295 Male, age 66, both hemispheres 78.6
2820 Female, age 79, both hemispheres 69.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 177.6
Samples: 159

Max nTPM: 314.4
Min nTPM: 86.0
Std nTPM: 44.6
Median nTPM: 170.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 314.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 306.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 303.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 281.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 277.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 268.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 268.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 268.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 262.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 258.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 253.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 253.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 252.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 247.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 244.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 238.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 237.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 237.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 237.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 235.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 235.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 234.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 231.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 227.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 223.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 223.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 221.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 219.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 215.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 215.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 212.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 212.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 210.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 209.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 206.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 206.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 204.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 203.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 201.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 200.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 199.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 198.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 198.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 198.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 198.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 197.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 197.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 196.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 196.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 195.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 194.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 193.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 192.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 187.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 184.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 183.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 183.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 183.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 182.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 181.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 179.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 179.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 179.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 179.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 178.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 178.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 178.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 178.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 178.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 176.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 176.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 175.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 175.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 174.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 174.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 172.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 171.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 171.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 170.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 170.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 170.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 170.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 169.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 169.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 167.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 166.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 166.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 165.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 165.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 164.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 164.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 163.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 162.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 162.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 161.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 161.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 160.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 160.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 159.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 159.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 158.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 158.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 157.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 157.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 156.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 155.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 155.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 155.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 154.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 153.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 153.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 150.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 150.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 150.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 149.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 148.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 147.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 146.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 145.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 145.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 142.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 141.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 141.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 140.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 140.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 139.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 137.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 137.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 136.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 135.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 132.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 132.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 131.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 129.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 127.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 127.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 125.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 123.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 123.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 122.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 122.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 122.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 122.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 121.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 120.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 120.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 119.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 118.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 116.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 111.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 107.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 96.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 86.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 80.1
FF:10181-103D1 60 years, female 114.9
FF:10159-103A6 76 years, female 45.3

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