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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1158.6 nTPM
HPA:923.8 nTPM
GTEx:1158.6 nTPM
FANTOM5:2437.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA053635
Glandular cells Medium

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

923.8
overview
Male, age 65
Small intestine sample 232
nTPM: 1062
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1039.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 866.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 726.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1158.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1158.6
Samples: 187

Max nTPM: 2695.6
Min nTPM: 571.1
Std nTPM: 443.1
Median nTPM: 1005.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2695.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2674.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2428.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2387.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2358.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2332.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2247.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2136.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2125.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 2096.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2031.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2025.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1964.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1922.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1905.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1899.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1861.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1790.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1784.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1783.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1740.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1716.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1672.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1640.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1631.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1628.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1625.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 1617.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1616.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1598.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1592.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1591.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1575.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1570.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1569.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1548.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1515.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1478.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1474.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1451.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1449.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1448.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1445.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1440.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1419.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1409.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1409.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1402.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1392.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1389.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1388.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1385.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1369.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1363.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1356.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1350.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1334.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1327.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1301.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1280.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1248.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1230.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1211.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1211.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1204.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1190.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1184.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1176.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1175.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1166.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1156.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1141.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1136.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1134.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1125.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1125.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1121.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1118.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1110.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1110.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1101.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1082.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1082.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1082.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1073.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1068.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1058.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1055.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1047.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1047.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1014.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1008.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1006.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1005.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1001.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1000.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 998.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 990.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 989.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 989.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 982.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 982.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 975.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 974.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 967.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 965.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 964.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 959.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 958.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 957.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 954.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 952.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 948.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 946.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 939.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 929.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 919.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 911.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 909.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 904.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 901.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 899.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 892.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 890.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 882.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 877.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 869.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 869.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 859.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 858.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 857.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 853.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 842.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 841.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 839.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 835.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 835.5
GTEX-1192X-2526-SM-59868 50-59 years, male 834.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 820.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 818.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 818.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 810.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 805.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 804.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 804.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 800.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 798.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 796.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 793.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 793.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 791.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 782.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 779.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 778.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 776.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 772.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 772.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 771.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 770.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 769.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 769.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 762.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 750.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 750.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 747.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 745.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 742.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 735.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 729.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 726.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 720.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 716.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 711.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 707.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 701.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 692.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 691.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 672.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 666.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 646.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 646.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 642.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 634.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 621.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 607.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 607.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 571.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2437.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2437.3
FF:10024-101D6 15,40,85 years, mixed 2437.3

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