MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.8 nTPM
HPA Brain:53.1 nTPM
GTEx:36.8 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:12.5 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.7
2586 Male, age 75, left hemisphere 82.7
2828 Female, age 72, unknown 66.4
1827 Male, age 72, unknown 53.2
2666 Male, age 74, left hemisphere 52.0
1870 Female, age 42, unknown 49.8
1833 Male, age 53, unknown 48.1
2019 Male, age 18, unknown 45.2
1830 Male, age 51, unknown 44.6
2411 Female, age 72, unknown 43.5
2219 Male, age 76, both hemispheres 41.4
Dorsal raphe nucleus
nTPM: 44.5
1828 Male, age 53, unknown 48.3
2016 Female, age 72, unknown 46.8
2047 Male, age 72, unknown 44.1
2298 Female, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 40.0
Inferior colliculus
nTPM: 46.4
2849 Male, age 72, unknown 51.3
1848 Female, age 42, unknown 50.2
1890 Male, age 53, unknown 43.7
2097 Female, age 72, unknown 40.2
Median raphe nucleus
nTPM: 32.8
2220 Male, age 76, midline 32.8
Periaquaductal grey, anterior
nTPM: 50.6
2502 Female, age 75, unknown 53.9
1795 Male, age 51, unknown 52.7
1947 Male, age 18, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 48.4
1840 Male, age 53, unknown 53.1
2464 Female, age 72, unknown 48.2
2850 Male, age 76, both hemispheres 47.4
1831 Male, age 72, unknown 45.0
Periaquaductal grey, lateral
nTPM: 46.0
2053 Male, age 18, unknown 51.7
2140 Male, age 76, both hemispheres 47.3
2272 Male, age 74, both hemispheres 39.0
Pretectal area
nTPM: 49.2
1816 Male, age 51, unknown 58.6
1817 Female, age 42, unknown 55.9
1815 Male, age 53, unknown 54.2
1944 Female, age 72, unknown 54.0
2407 Male, age 75, both hemispheres 53.4
2007 Male, age 72, unknown 52.1
2667 Female, age 75, unknown 49.9
2825 Male, age 18, unknown 49.1
2224 Female, age 72, unknown 42.6
2273 Male, age 74, both hemispheres 37.8
2316 Male, age 76, right hemisphere 34.0
Red nucleus
nTPM: 51.1
2584 Male, age 75, left hemisphere 58.3
2588 Male, age 74, left hemisphere 57.9
1954 Female, age 42, unknown 53.1
2227 Male, age 72, unknown 52.7
2503 Female, age 72, unknown 52.7
2769 Male, age 72, unknown 52.3
1904 Male, age 53, unknown 51.3
1865 Male, age 51, unknown 49.1
2785 Male, age 18, unknown 48.6
1821 Female, age 72, unknown 47.8
2823 Male, age 76, right hemisphere 46.4
2725 Female, age 75, unknown 42.9
Substantia nigra
nTPM: 49.4
2665 Male, age 74, both hemispheres 57.9
1916 Female, age 42, unknown 55.6
2590 Female, age 75, unknown 51.7
2583 Male, age 75, right hemisphere 51.3
2699 Male, age 18, unknown 51.2
1851 Male, age 51, unknown 49.2
2409 Female, age 72, unknown 48.6
1889 Female, age 72, unknown 47.6
1941 Male, age 53, unknown 40.9
2241 Male, age 72, unknown 40.3
Superior colliculus
nTPM: 53.1
2664 Male, age 75, both hemispheres 86.8
2261 Male, age 18, unknown 57.9
2087 Female, age 72, unknown 54.2
2668 Female, age 75, unknown 53.3
1796 Male, age 53, unknown 52.9
1995 Male, age 72, unknown 52.2
1839 Male, age 51, unknown 47.8
1913 Female, age 42, unknown 46.5
2587 Male, age 74, left hemisphere 42.8
1895 Male, age 76, right hemisphere 36.1
Ventral tegmental area
nTPM: 45.7
2410 Female, age 72, unknown 49.4
2223 Female, age 72, unknown 47.9
1942 Male, age 51, unknown 46.9
1915 Female, age 42, unknown 46.0
2021 Male, age 53, unknown 45.1
2218 Male, age 76, both hemispheres 38.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.8
Samples: 139

Max nTPM: 138.9
Min nTPM: 13.5
Std nTPM: 17.7
Median nTPM: 32.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 138.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 92.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 91.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 85.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 82.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 78.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 70.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 68.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 67.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 65.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 63.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.7
FF:10158-103A5 76 years, female 61.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.9
Samples: 4

Max nTPM: 29.1
Min nTPM: 22.4
Sample A Female 23.1
Sample B Female 22.4
Sample C Male 24.9
Sample D Male 29.1
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 18.7
Sample A Female 28.0
Sample B Female 18.7
Sample C Male 20.7
Sample D Male 20.7
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 24.0
Min nTPM: 19.3
Sample B Female 19.3
Sample C Male 24.0
Sample D Male 23.4
Superior colliculi
nTPM: 21.2
Samples: 4

Max nTPM: 22.2
Min nTPM: 20.4
Sample A Female 20.7
Sample B Female 21.5
Sample C Male 20.4
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.4
Sample A Male 13.4
Sample B Male 11.4
Sample C Female 13.0
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
71656916 Antisense, RP_050927_04_E07, Mouse strain C57BL/6J (56 days, male) 4.1

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