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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:58.2 nTPM
HPA Brain:343.5 nTPM
GTEx:58.2 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:90.9 nTPM
Mouse:44.9 nTPM
Allen mouse:5.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

343.5
Sample id Sample description nTPM
Amygdala
nTPM: 330.4
2695 Female, age 67, right hemisphere 354.4
1987 Female, age 91, left hemisphere 354.1
2514 Male, age 75, right hemisphere 325.4
2814 Male, age 76, right hemisphere 317.2
2517 Female, age 94, left hemisphere 300.7
Basal amygdala
nTPM: 338.1
2609 Male, age 75, right hemisphere 389.3
2243 Female, age 91, right hemisphere 387.2
1955 Male, age 76, both hemispheres 346.6
2110 Male, age 80, left hemisphere 337.2
2685 Female, age 94, left hemisphere 319.3
2827 Female, age 67, right hemisphere 249.4
Central amygdala
nTPM: 306.7
1905 Male, age 76, both hemispheres 339.9
2515 Male, age 75, right hemisphere 338.3
2239 Male, age 80, left hemisphere 325.8
2701 Female, age 91, right hemisphere 301.1
2826 Female, age 94, left hemisphere 228.4
Corticomedial amygdala
nTPM: 343.5
2240 Male, age 76, both hemispheres 387.9
2242 Female, age 91, right hemisphere 365.3
2829 Male, age 80, left hemisphere 359.3
2428 Male, age 75, right hemisphere 348.7
2429 Female, age 94, left hemisphere 325.7
2535 Female, age 67, right hemisphere 273.8
Lateral amygdala
nTPM: 290.0
2516 Male, age 75, right hemisphere 324.2
2256 Male, age 80, left hemisphere 322.6
2255 Female, age 91, right hemisphere 305.8
1883 Male, age 76, both hemispheres 299.4
2534 Female, age 94, left hemisphere 266.3
2830 Female, age 67, right hemisphere 221.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 58.2
Samples: 152

Max nTPM: 129.8
Min nTPM: 20.3
Std nTPM: 14.1
Median nTPM: 55.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 129.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 105.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 94.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 92.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 92.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 90.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 89.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 83.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 81.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 79.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 77.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 75.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 75.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 74.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 74.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 73.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 73.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 73.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 71.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 71.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 71.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 70.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 70.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 69.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 68.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 67.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 67.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 67.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 67.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 66.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 66.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 66.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 66.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 65.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 65.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 64.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 63.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 63.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 63.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 63.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 62.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 62.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 62.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 62.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 62.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 61.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 61.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 61.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 61.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 61.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 60.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 59.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 59.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 59.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 59.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 59.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 59.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 58.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 58.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 58.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 58.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 58.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 58.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 57.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 57.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 56.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 56.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 56.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 56.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 56.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 56.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 55.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 55.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 55.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 55.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 55.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 55.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 55.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 54.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 53.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 53.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 53.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 53.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 52.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 52.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 52.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 52.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 52.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 52.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 51.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 51.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 51.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 51.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 51.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 51.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 50.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 50.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 50.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 50.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 50.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 49.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 49.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 49.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 49.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 49.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 48.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 48.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 48.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 48.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 48.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 48.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 47.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 47.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 47.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 47.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 46.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 46.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 46.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 46.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 45.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 45.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 45.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 45.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 44.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 43.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 42.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 42.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 41.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 40.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 39.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 39.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 39.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 39.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 39.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 38.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 20.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 16.9
FF:10151-102I7 76 years, female 16.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.9
Pig sample Sample description nTPM
Amygdala
nTPM: 90.9
Samples: 4

Max nTPM: 103.3
Min nTPM: 78.3
Sample A Female 100.2
Sample B Female 78.3
Sample C Male 81.9
Sample D Male 103.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 44.9
Samples: 4

Max nTPM: 45.6
Min nTPM: 43.5
Sample A Male 45.6
Sample B Male 43.5
Sample C Female 44.9
Sample D Female 45.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.5
1994 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 6.1
69012795 Antisense, RP_050309_01_E04, Mouse strain C57BL/6J (56 days, male) 4.9
1995 Antisense, RP_Baylor_103380, Mouse strain C57BL/6J (56 days, male) 3.8

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