MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.5 nTPM
HPA Brain:139.1 nTPM
GTEx:21.5 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:59.2 nTPM
Mouse:5.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 139.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.7
2828 Female, age 72, unknown 169.6
2586 Male, age 75, left hemisphere 166.9
2019 Male, age 18, unknown 138.2
1827 Male, age 72, unknown 108.8
2666 Male, age 74, left hemisphere 107.2
1870 Female, age 42, unknown 99.3
2411 Female, age 72, unknown 87.2
1830 Male, age 51, unknown 86.9
2219 Male, age 76, both hemispheres 82.1
1833 Male, age 53, unknown 81.0
Dorsal raphe nucleus
nTPM: 119.1
2016 Female, age 72, unknown 127.1
1828 Male, age 53, unknown 125.5
2047 Male, age 72, unknown 121.2
2298 Female, age 72, unknown 120.7
2750 Male, age 76, both hemispheres 100.8
Inferior colliculus
nTPM: 90.8
1848 Female, age 42, unknown 96.0
2097 Female, age 72, unknown 92.0
1890 Male, age 53, unknown 88.1
2849 Male, age 72, unknown 86.9
Median raphe nucleus
nTPM: 105.9
2220 Male, age 76, midline 105.9
Periaquaductal grey, anterior
nTPM: 135.3
1795 Male, age 51, unknown 174.0
2502 Female, age 75, unknown 123.1
1947 Male, age 18, unknown 108.8
Periaquaductal grey, dorsal
nTPM: 122.0
1831 Male, age 72, unknown 141.7
2850 Male, age 76, both hemispheres 135.2
1840 Male, age 53, unknown 110.6
2464 Female, age 72, unknown 100.7
Periaquaductal grey, lateral
nTPM: 139.1
2140 Male, age 76, both hemispheres 146.2
2272 Male, age 74, both hemispheres 145.7
2053 Male, age 18, unknown 125.4
Pretectal area
nTPM: 136.0
2273 Male, age 74, both hemispheres 189.3
1944 Female, age 72, unknown 146.9
2007 Male, age 72, unknown 140.0
1816 Male, age 51, unknown 138.8
2407 Male, age 75, both hemispheres 135.3
2667 Female, age 75, unknown 133.9
2316 Male, age 76, right hemisphere 132.7
1817 Female, age 42, unknown 132.2
1815 Male, age 53, unknown 127.3
2224 Female, age 72, unknown 116.3
2825 Male, age 18, unknown 103.1
Red nucleus
nTPM: 100.5
2785 Male, age 18, unknown 141.7
2725 Female, age 75, unknown 130.3
2503 Female, age 72, unknown 112.3
2584 Male, age 75, left hemisphere 104.3
2823 Male, age 76, right hemisphere 99.7
2769 Male, age 72, unknown 97.0
2227 Male, age 72, unknown 95.7
2588 Male, age 74, left hemisphere 91.9
1954 Female, age 42, unknown 89.2
1865 Male, age 51, unknown 87.0
1904 Male, age 53, unknown 83.1
1821 Female, age 72, unknown 73.8
Substantia nigra
nTPM: 97.9
1941 Male, age 53, unknown 136.0
2583 Male, age 75, right hemisphere 108.5
1851 Male, age 51, unknown 107.1
1916 Female, age 42, unknown 103.0
1889 Female, age 72, unknown 99.5
2665 Male, age 74, both hemispheres 95.6
2590 Female, age 75, unknown 95.3
2699 Male, age 18, unknown 93.5
2409 Female, age 72, unknown 75.5
2241 Male, age 72, unknown 65.1
Superior colliculus
nTPM: 131.7
2664 Male, age 75, both hemispheres 192.9
1995 Male, age 72, unknown 166.0
2087 Female, age 72, unknown 148.9
1913 Female, age 42, unknown 144.5
1796 Male, age 53, unknown 138.1
2261 Male, age 18, unknown 126.8
2587 Male, age 74, left hemisphere 111.4
2668 Female, age 75, unknown 105.9
1839 Male, age 51, unknown 105.3
1895 Male, age 76, right hemisphere 76.8
Ventral tegmental area
nTPM: 111.8
2021 Male, age 53, unknown 130.2
1942 Male, age 51, unknown 126.9
2218 Male, age 76, both hemispheres 109.0
2223 Female, age 72, unknown 108.7
1915 Female, age 42, unknown 105.2
2410 Female, age 72, unknown 90.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.5
Samples: 139

Max nTPM: 47.4
Min nTPM: 8.6
Std nTPM: 7.2
Median nTPM: 19.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 47.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 42.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 41.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 40.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 39.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 38.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 35.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 33.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.0
Samples: 4

Max nTPM: 65.9
Min nTPM: 52.7
Sample A Female 57.2
Sample B Female 65.9
Sample C Male 52.7
Sample D Male 60.0
Midbrain
nTPM: 58.9
Samples: 4

Max nTPM: 89.6
Min nTPM: 30.6
Sample A Female 89.6
Sample B Female 30.6
Sample C Male 71.8
Sample D Male 43.7
Periaqueductal gray
nTPM: 44.6
Samples: 3

Max nTPM: 55.3
Min nTPM: 35.8
Sample B Female 35.8
Sample C Male 55.3
Sample D Male 42.7
Superior colliculi
nTPM: 59.2
Samples: 4

Max nTPM: 66.2
Min nTPM: 53.8
Sample A Female 53.8
Sample B Female 60.7
Sample C Male 66.2
Sample D Male 56.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.4
Sample A Male 5.1
Sample B Male 5.8
Sample C Female 4.4
Sample D Female 5.2

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