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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:404.9 nTPM
HPA Brain:549.4 nTPM
GTEx:404.9 nTPM
FANTOM5:310.0 Scaled Tags Per Million
Pig:439.0 nTPM
Mouse:601.9 nTPM
Allen mouse:25.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

549.4
Sample id Sample description nTPM
Amygdala
nTPM: 224.0
2517 Female, age 94, left hemisphere 442.4
1987 Female, age 91, left hemisphere 308.4
2514 Male, age 75, right hemisphere 268.6
2695 Female, age 67, right hemisphere 65.4
2814 Male, age 76, right hemisphere 35.3
Basal amygdala
nTPM: 549.4
2243 Female, age 91, right hemisphere 787.9
2685 Female, age 94, left hemisphere 675.2
2827 Female, age 67, right hemisphere 614.7
2110 Male, age 80, left hemisphere 506.7
2609 Male, age 75, right hemisphere 477.7
1955 Male, age 76, both hemispheres 234.0
Central amygdala
nTPM: 348.8
2826 Female, age 94, left hemisphere 681.2
2239 Male, age 80, left hemisphere 463.8
2701 Female, age 91, right hemisphere 321.2
2515 Male, age 75, right hemisphere 256.6
1905 Male, age 76, both hemispheres 21.3
Corticomedial amygdala
nTPM: 521.6
2242 Female, age 91, right hemisphere 923.0
2829 Male, age 80, left hemisphere 679.6
2535 Female, age 67, right hemisphere 629.7
2428 Male, age 75, right hemisphere 360.5
2429 Female, age 94, left hemisphere 321.1
2240 Male, age 76, both hemispheres 215.4
Lateral amygdala
nTPM: 378.6
2534 Female, age 94, left hemisphere 636.8
2255 Female, age 91, right hemisphere 492.0
2256 Male, age 80, left hemisphere 459.2
2830 Female, age 67, right hemisphere 331.2
2516 Male, age 75, right hemisphere 221.1
1883 Male, age 76, both hemispheres 131.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

404.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 404.9
Samples: 152

Max nTPM: 1316.0
Min nTPM: 20.9
Std nTPM: 207.5
Median nTPM: 370.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1316.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1313.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1153.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 977.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 953.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 835.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 821.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 721.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 715.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 680.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 672.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 671.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 659.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 642.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 634.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 630.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 615.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 613.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 604.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 594.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 584.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 580.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 574.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 560.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 558.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 555.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 550.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 548.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 544.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 541.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 534.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 526.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 525.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 525.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 521.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 519.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 514.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 513.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 504.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 495.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 494.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 488.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 471.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 460.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 459.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 458.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 449.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 444.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 444.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 439.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 438.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 437.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 437.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 429.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 428.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 423.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 420.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 420.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 420.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 409.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 408.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 404.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 402.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 401.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 399.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 398.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 394.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 392.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 387.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 386.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 385.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 385.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 382.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 382.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 371.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 371.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 370.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 368.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 367.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 366.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 364.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 363.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 360.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 360.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 359.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 358.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 353.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 352.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 352.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 351.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 340.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 339.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 335.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 335.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 332.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 331.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 327.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 325.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 325.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 321.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 317.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 313.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 310.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 309.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 309.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 309.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 298.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 296.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 293.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 286.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 284.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 274.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 274.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 270.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 269.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 267.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 266.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 261.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 252.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 251.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 251.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 250.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 246.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 244.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 241.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 239.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 235.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 233.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 230.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 230.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 224.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 222.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 211.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 209.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 202.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 193.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 178.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 177.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 170.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 161.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 157.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 149.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 142.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 134.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 131.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 127.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 123.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 116.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 89.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 60.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

310.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 310.0
FF:10151-102I7 76 years, female 310.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

439.0
Pig sample Sample description nTPM
Amygdala
nTPM: 439.0
Samples: 4

Max nTPM: 607.3
Min nTPM: 285.5
Sample A Female 607.3
Sample B Female 285.5
Sample C Male 453.2
Sample D Male 410.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

601.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 601.9
Samples: 4

Max nTPM: 648.1
Min nTPM: 558.8
Sample A Male 558.8
Sample B Male 608.2
Sample C Female 648.1
Sample D Female 592.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.2
74586669 Antisense, RP_051214_01_B09, Mouse strain C57BL/6J (56 days, male) 26.1
69015811 Antisense, RP_050315_01_G04, Mouse strain C57BL/6J (56 days, male) 24.2

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