MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.9 nTPM
HPA Brain:29.0 nTPM
GTEx:7.9 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:54.1 nTPM
Mouse:77.3 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.5
2411 Female, age 72, unknown 28.8
1870 Female, age 42, unknown 26.6
1827 Male, age 72, unknown 26.0
1833 Male, age 53, unknown 24.9
1830 Male, age 51, unknown 24.8
2019 Male, age 18, unknown 23.2
2219 Male, age 76, both hemispheres 22.5
2828 Female, age 72, unknown 18.7
2666 Male, age 74, left hemisphere 15.5
2586 Male, age 75, left hemisphere 14.5
Dorsal raphe nucleus
nTPM: 25.8
2298 Female, age 72, unknown 29.5
2750 Male, age 76, both hemispheres 27.3
2047 Male, age 72, unknown 25.4
2016 Female, age 72, unknown 24.1
1828 Male, age 53, unknown 22.7
Inferior colliculus
nTPM: 27.8
1848 Female, age 42, unknown 29.6
2849 Male, age 72, unknown 28.5
2097 Female, age 72, unknown 27.4
1890 Male, age 53, unknown 25.6
Median raphe nucleus
nTPM: 29.0
2220 Male, age 76, midline 29.0
Periaquaductal grey, anterior
nTPM: 24.8
1947 Male, age 18, unknown 30.4
2502 Female, age 75, unknown 22.7
1795 Male, age 51, unknown 21.4
Periaquaductal grey, dorsal
nTPM: 26.7
1840 Male, age 53, unknown 28.9
2850 Male, age 76, both hemispheres 27.8
2464 Female, age 72, unknown 26.9
1831 Male, age 72, unknown 23.3
Periaquaductal grey, lateral
nTPM: 26.9
2272 Male, age 74, both hemispheres 28.0
2140 Male, age 76, both hemispheres 27.1
2053 Male, age 18, unknown 25.5
Pretectal area
nTPM: 24.6
2224 Female, age 72, unknown 28.8
2273 Male, age 74, both hemispheres 28.1
2667 Female, age 75, unknown 27.7
2825 Male, age 18, unknown 25.9
2316 Male, age 76, right hemisphere 24.7
2007 Male, age 72, unknown 24.4
1944 Female, age 72, unknown 23.2
1815 Male, age 53, unknown 22.8
1816 Male, age 51, unknown 22.6
2407 Male, age 75, both hemispheres 22.1
1817 Female, age 42, unknown 20.3
Red nucleus
nTPM: 21.3
1821 Female, age 72, unknown 23.6
1954 Female, age 42, unknown 22.7
1865 Male, age 51, unknown 22.2
2503 Female, age 72, unknown 21.8
2725 Female, age 75, unknown 21.5
2588 Male, age 74, left hemisphere 21.4
2584 Male, age 75, left hemisphere 21.1
2769 Male, age 72, unknown 21.1
2823 Male, age 76, right hemisphere 21.1
2227 Male, age 72, unknown 20.8
1904 Male, age 53, unknown 20.1
2785 Male, age 18, unknown 18.7
Substantia nigra
nTPM: 20.0
2241 Male, age 72, unknown 24.5
2409 Female, age 72, unknown 22.7
1941 Male, age 53, unknown 22.3
1889 Female, age 72, unknown 21.6
2590 Female, age 75, unknown 20.7
2583 Male, age 75, right hemisphere 20.0
1916 Female, age 42, unknown 18.2
1851 Male, age 51, unknown 17.7
2665 Male, age 74, both hemispheres 17.0
2699 Male, age 18, unknown 15.6
Superior colliculus
nTPM: 22.3
1895 Male, age 76, right hemisphere 28.4
1839 Male, age 51, unknown 28.2
2587 Male, age 74, left hemisphere 24.6
2261 Male, age 18, unknown 24.3
1913 Female, age 42, unknown 21.5
2087 Female, age 72, unknown 20.6
1796 Male, age 53, unknown 20.1
2668 Female, age 75, unknown 20.0
2664 Male, age 75, both hemispheres 18.0
1995 Male, age 72, unknown 17.7
Ventral tegmental area
nTPM: 22.5
2021 Male, age 53, unknown 25.0
2410 Female, age 72, unknown 22.8
2218 Male, age 76, both hemispheres 22.4
2223 Female, age 72, unknown 22.1
1915 Female, age 42, unknown 22.0
1942 Male, age 51, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.9
Samples: 139

Max nTPM: 16.3
Min nTPM: 4.3
Std nTPM: 2.1
Median nTPM: 7.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 14.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 13.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 13.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 11.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.4
FF:10158-103A5 76 years, female 57.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 54.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.7
Samples: 4

Max nTPM: 58.2
Min nTPM: 31.1
Sample A Female 58.2
Sample B Female 37.2
Sample C Male 56.1
Sample D Male 31.1
Midbrain
nTPM: 48.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 32.5
Sample A Female 32.5
Sample B Female 50.0
Sample C Male 50.1
Sample D Male 62.2
Periaqueductal gray
nTPM: 54.0
Samples: 3

Max nTPM: 63.0
Min nTPM: 47.9
Sample B Female 51.2
Sample C Male 63.0
Sample D Male 47.9
Superior colliculi
nTPM: 49.8
Samples: 4

Max nTPM: 60.0
Min nTPM: 38.4
Sample A Female 54.1
Sample B Female 38.4
Sample C Male 46.6
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 77.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.4
Samples: 4

Max nTPM: 81.9
Min nTPM: 68.7
Sample A Male 68.7
Sample B Male 81.9
Sample C Female 81.2
Sample D Female 77.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
583840 Antisense, RP_040831_01_A01, Mouse strain C57BL/6J (56 days, male) 2.1

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