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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:82.5 nTPM
GTEx:82.5 nTPM
FANTOM5:13.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA067089
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 82.5
Samples: 156

Max nTPM: 444.7
Min nTPM: 7.5
Std nTPM: 76.5
Median nTPM: 59.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 444.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 275.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 275.3
GTEX-S341-1226-SM-4AD5S 40-49 years, female 261.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 241.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 234.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 228.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 226.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 226.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 216.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 204.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 196.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 184.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 183.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 179.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 178.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 173.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 172.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 169.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 169.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 168.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 168.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 167.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 166.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 161.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 160.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 159.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 154.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 152.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 151.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 150.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 150.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 149.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 147.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 146.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 142.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 137.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 136.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 135.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 131.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 131.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 130.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 129.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 127.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 127.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 126.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 124.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 122.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 120.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 118.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 117.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 113.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 112.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 111.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 111.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 109.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 108.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 108.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 106.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 106.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 106.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 102.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 102.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 95.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 91.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 89.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 89.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 84.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 82.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 81.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 80.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 74.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 73.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 65.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 64.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 61.8
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 60.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 60.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 58.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 57.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 52.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 52.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 52.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 50.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 45.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 44.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 39.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 36.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 36.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 36.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 35.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 34.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 34.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 34.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 33.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 32.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 29.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 24.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 23.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 22.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 22.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 21.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 20.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 19.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 19.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 19.6
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 17.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 17.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 17.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 16.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 15.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 14.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 14.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 14.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 13.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 13.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 13.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 12.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 12.8
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 12.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 12.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 12.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 12.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 11.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 11.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 11.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 11.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 11.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 10.9
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 10.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 10.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 10.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 10.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 10.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 10.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 10.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 10.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 10.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 9.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 9.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 9.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 9.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 9.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 9.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 9.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 9.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 9.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 9.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 9.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 9.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 8.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 8.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 8.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 8.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 8.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 7.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 13.8
FF:10204-103F6 68 years, female 13.8

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