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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

42.863
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:18.3 nTPM
HPA Brain:51.4 nTPM
GTEx:18.3 nTPM
FANTOM5:107.4 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:35.9 nTPM
Allen mouse:1.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA077376
Amygdala mean intensity 42.863
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 42.863
Basal medial amygdaloid nucleus 40.604
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 35.127
Cortical amygdala 41.659
Central amygdala 41.947
Medial amygdaloid nucleus 42.552

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.4
Sample id Sample description nTPM
Amygdala
nTPM: 51.4
2695 Female, age 67, right hemisphere 77.0
2514 Male, age 75, right hemisphere 50.9
1987 Female, age 91, left hemisphere 46.6
2814 Male, age 76, right hemisphere 46.3
2517 Female, age 94, left hemisphere 36.1
Basal amygdala
nTPM: 37.7
2110 Male, age 80, left hemisphere 44.3
2609 Male, age 75, right hemisphere 42.2
1955 Male, age 76, both hemispheres 38.2
2243 Female, age 91, right hemisphere 36.1
2827 Female, age 67, right hemisphere 34.6
2685 Female, age 94, left hemisphere 31.0
Central amygdala
nTPM: 40.4
2515 Male, age 75, right hemisphere 48.5
1905 Male, age 76, both hemispheres 44.2
2826 Female, age 94, left hemisphere 43.7
2239 Male, age 80, left hemisphere 34.7
2701 Female, age 91, right hemisphere 31.1
Corticomedial amygdala
nTPM: 41.4
2428 Male, age 75, right hemisphere 53.6
2829 Male, age 80, left hemisphere 43.5
2240 Male, age 76, both hemispheres 41.0
2242 Female, age 91, right hemisphere 38.9
2429 Female, age 94, left hemisphere 36.4
2535 Female, age 67, right hemisphere 34.9
Lateral amygdala
nTPM: 38.8
2830 Female, age 67, right hemisphere 49.6
1883 Male, age 76, both hemispheres 46.1
2256 Male, age 80, left hemisphere 38.7
2516 Male, age 75, right hemisphere 36.7
2534 Female, age 94, left hemisphere 35.5
2255 Female, age 91, right hemisphere 26.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 18.3
Samples: 152

Max nTPM: 42.6
Min nTPM: 5.8
Std nTPM: 7.7
Median nTPM: 16.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 42.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 42.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 41.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 40.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 39.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 36.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 35.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 34.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 32.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 31.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 30.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 29.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 29.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 28.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 28.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 27.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 27.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 27.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 26.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 26.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 26.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 25.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 25.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 25.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 24.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 24.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 24.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 23.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 23.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 23.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 23.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 23.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 23.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 23.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 23.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 22.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 22.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 22.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 22.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 21.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 21.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 20.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 20.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 20.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 20.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 20.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 20.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 20.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 20.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 20.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 19.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 19.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 19.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 19.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 19.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 19.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 18.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 18.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 18.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 18.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 18.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 18.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 18.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 17.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 17.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 17.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 17.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 17.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 17.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 17.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 16.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 16.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 16.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 16.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 16.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 16.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 16.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 16.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 16.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 15.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 15.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 15.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 15.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 15.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 15.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 15.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 14.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 14.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 14.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 14.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 14.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 14.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 14.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 14.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 14.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 14.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 14.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 14.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 14.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 14.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 13.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 13.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 13.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 13.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 13.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 13.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 13.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 13.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 13.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 13.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 13.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 13.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 12.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 12.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 12.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 12.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 12.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 12.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 12.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 11.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 11.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 11.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 11.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 11.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 11.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 11.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 11.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 11.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 10.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 10.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 10.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 10.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 9.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 9.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 8.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 8.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 8.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 8.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 8.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 8.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 7.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 7.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 7.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 7.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 6.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 6.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 5.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 107.4
FF:10151-102I7 76 years, female 107.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.2
Pig sample Sample description nTPM
Amygdala
nTPM: 38.2
Samples: 4

Max nTPM: 45.7
Min nTPM: 25.3
Sample A Female 45.7
Sample B Female 45.7
Sample C Male 25.3
Sample D Male 36.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 35.9
Samples: 4

Max nTPM: 39.6
Min nTPM: 30.8
Sample A Male 39.2
Sample B Male 34.1
Sample C Female 30.8
Sample D Female 39.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.5
69735729 Antisense, RP_050503_03_D08, Mouse strain C57BL/6J (56 days, male) 1.9
73520993 Antisense, RP_051101_02_G12, Mouse strain C57BL/6J (56 days, male) 1.2

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