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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:217.9 nTPM
FANTOM5:509.1 Scaled Tags Per Million
Pig:289.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036980Antibody HPA036981
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 217.9
Samples: 246

Max nTPM: 381.7
Min nTPM: 121.4
Std nTPM: 43.6
Median nTPM: 217.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 381.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 329.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 317.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 314.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 312.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 307.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 298.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 296.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 293.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 290.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 287.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 286.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 286.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 286.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 284.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 284.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 283.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 282.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 279.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 277.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 276.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 275.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 273.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 273.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 272.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 271.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 271.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 271.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 270.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 270.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 268.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 268.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 268.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 268.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 267.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 267.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 265.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 264.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 264.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 261.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 258.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 257.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 257.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 256.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 256.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 255.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 255.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 254.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 254.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 254.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 254.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 253.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 253.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 252.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 252.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 251.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 251.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 251.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 251.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 250.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 248.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 248.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 247.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 246.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 246.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 246.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 246.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 245.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 244.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 244.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 242.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 242.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 242.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 242.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 241.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 240.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 240.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 240.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 239.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 239.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 239.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 239.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 237.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 237.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 236.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 236.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 235.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 235.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 235.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 235.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 234.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 234.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 232.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 232.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 231.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 230.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 230.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 230.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 230.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 229.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 229.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 228.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 228.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 227.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 226.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 226.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 225.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 225.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 224.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 224.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 223.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 222.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 222.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 222.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 221.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 219.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 218.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 218.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 218.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 218.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 218.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 217.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 217.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 217.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 216.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 216.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 216.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 215.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 215.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 214.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 214.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 214.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 213.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 213.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 212.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 212.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 209.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 209.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 209.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 209.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 208.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 208.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 208.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 207.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 206.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 205.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 203.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 203.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 202.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 202.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 202.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 202.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 202.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 200.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 200.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 199.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 198.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 198.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 198.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 198.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 197.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 197.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 197.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 197.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 196.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 196.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 195.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 194.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 194.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 194.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 193.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 193.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 193.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 192.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 192.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 191.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 191.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 191.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 191.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 189.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 189.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 188.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 187.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 187.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 186.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 186.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 185.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 185.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 185.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 184.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 184.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 184.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 184.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 183.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 183.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 182.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 181.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 181.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 181.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 180.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 180.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 180.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 180.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 179.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 179.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 177.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 177.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 176.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 172.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 171.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 170.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 169.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 169.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 168.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 168.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 168.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 166.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 164.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 164.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 164.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 163.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 161.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 160.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 160.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 157.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 153.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 153.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 152.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 150.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 148.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 147.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 146.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 142.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 142.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 142.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 139.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 139.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 139.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 138.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 137.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 133.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 129.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 128.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 125.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 121.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

509.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 509.1
FF:10164-103B2 76 years, female 509.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.1
Pig sample Sample description nTPM
Caudate
nTPM: 289.1
Samples: 4

Max nTPM: 389.9
Min nTPM: 213.6
Sample A Female 213.6
Sample B Female 295.8
Sample C Male 389.9
Sample D Male 257.2

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