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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.2 nTPM
HPA:57.3 nTPM
GTEx:134.2 nTPM
FANTOM5:418.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036980Antibody HPA036981
Glandular cells Not detectedMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.3
overview
Male, age 65
Small intestine sample 232
nTPM: 53.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 66.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 48.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 61.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 134.2
Samples: 187

Max nTPM: 471.3
Min nTPM: 73.0
Std nTPM: 38.7
Median nTPM: 127.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 471.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 223.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 222.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 218.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 214.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 203.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 198.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 194.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 189.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 184.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 183.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 182.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 181.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 180.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 179.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 177.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 173.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 172.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 172.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 172.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 171.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 169.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 169.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 169.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 169.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 168.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 166.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 166.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 165.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 165.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 164.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 159.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 159.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 159.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 158.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 158.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 157.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 156.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 154.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 154.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 153.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 153.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 153.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 153.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 151.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 150.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 149.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 149.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 149.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 149.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 149.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 147.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 147.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 147.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 146.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 144.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 144.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 143.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 143.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 143.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 143.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 143.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 143.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 142.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 142.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 142.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 141.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 141.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 141.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 141.7
GTEX-1192X-2526-SM-59868 50-59 years, male 141.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 141.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 139.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 139.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 138.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 137.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 137.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 136.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 135.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 135.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 135.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 135.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 135.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 134.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 133.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 132.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 132.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 130.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 129.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 129.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 128.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 128.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 127.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 127.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 127.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 127.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 127.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 126.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 126.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 126.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 125.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 125.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 124.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 124.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 124.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 123.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 123.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 123.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 123.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 123.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 122.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 122.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 121.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 120.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 120.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 120.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 119.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 119.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 119.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 119.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 119.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 118.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 118.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 118.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 118.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 118.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 117.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 117.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 116.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 116.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 115.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 115.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 115.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 115.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 114.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 114.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 114.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 113.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 112.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 112.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 112.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 111.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 111.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 111.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 110.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 109.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 109.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 108.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 105.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 105.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 104.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 104.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 104.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 104.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 103.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 103.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 103.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 103.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 103.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 103.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 102.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 101.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 101.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 99.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 96.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 96.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 95.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 95.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 95.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 94.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 94.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 94.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 94.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 93.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 92.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 92.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 88.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 87.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 87.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 86.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 85.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 84.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 84.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 83.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 77.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 73.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 73.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

418.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 418.9
FF:10024-101D6 15,40,85 years, mixed 418.9

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