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GDPD4
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

GDPD4
Synonyms GDE6
Gene descriptioni

Full gene name according to HGNC.

Glycerophosphodiester phosphodiesterase domain containing 4
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at transcript level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q13.5
Chromosome location (bp) 77216558 - 77301687
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000178795 (version 109)
Entrez gene 220032
HGNC HGNC:24849
UniProt Q6W3E5 (UniProt - Evidence at transcript level)
neXtProt NX_Q6W3E5
GeneCards GDPD4
Antibodypedia GDPD4 antibodies


PROTEIN FUNCTION
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable metal ion binding activity and phosphoric diester hydrolase activity. Predicted to be involved in lipid metabolic process. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
GDPD4-201
ENSP00000320815
ENST00000315938
Q6W3E5
[Direct mapping] Glycerophosphodiester phosphodiesterase domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at transcript level
   DeepTMHMM predicted membrane proteins
Show all
GO:0006629 [lipid metabolic process]
GO:0008081 [phosphoric diester hydrolase activity]
GO:0008889 [glycerophosphodiester phosphodiesterase activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
Show all
520 aa
60.8 kDa
No 5
GDPD4-202
ENSP00000365390
ENST00000376217
Q6W3E5
[Direct mapping] Glycerophosphodiester phosphodiesterase domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at transcript level
   DeepTMHMM predicted membrane proteins
Show all
GO:0006629 [lipid metabolic process]
GO:0008081 [phosphoric diester hydrolase activity]
GO:0008889 [glycerophosphodiester phosphodiesterase activity]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
Show all
623 aa
72 kDa
No 5

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