MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA Brain:80.5 nTPM
GTEx:12.9 nTPM
FANTOM5:45.4 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:13.4 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.7
2586 Male, age 75, left hemisphere 104.2
2019 Male, age 18, unknown 93.1
2828 Female, age 72, unknown 86.7
2666 Male, age 74, left hemisphere 72.4
1827 Male, age 72, unknown 66.1
2219 Male, age 76, both hemispheres 63.3
1833 Male, age 53, unknown 59.2
1830 Male, age 51, unknown 58.6
1870 Female, age 42, unknown 57.5
2411 Female, age 72, unknown 56.2
Dorsal raphe nucleus
nTPM: 55.9
2750 Male, age 76, both hemispheres 66.6
1828 Male, age 53, unknown 57.0
2016 Female, age 72, unknown 52.4
2047 Male, age 72, unknown 51.9
2298 Female, age 72, unknown 51.5
Inferior colliculus
nTPM: 69.5
1890 Male, age 53, unknown 76.6
2097 Female, age 72, unknown 74.8
1848 Female, age 42, unknown 66.8
2849 Male, age 72, unknown 59.7
Median raphe nucleus
nTPM: 49.9
2220 Male, age 76, midline 49.9
Periaquaductal grey, anterior
nTPM: 80.5
2502 Female, age 75, unknown 85.6
1795 Male, age 51, unknown 79.3
1947 Male, age 18, unknown 76.7
Periaquaductal grey, dorsal
nTPM: 47.4
2464 Female, age 72, unknown 54.2
1831 Male, age 72, unknown 54.1
1840 Male, age 53, unknown 41.0
2850 Male, age 76, both hemispheres 40.2
Periaquaductal grey, lateral
nTPM: 52.3
2272 Male, age 74, both hemispheres 59.5
2140 Male, age 76, both hemispheres 51.2
2053 Male, age 18, unknown 46.2
Pretectal area
nTPM: 75.0
2007 Male, age 72, unknown 112.0
1816 Male, age 51, unknown 100.4
1944 Female, age 72, unknown 98.7
1817 Female, age 42, unknown 90.3
1815 Male, age 53, unknown 78.1
2667 Female, age 75, unknown 70.7
2316 Male, age 76, right hemisphere 68.3
2407 Male, age 75, both hemispheres 59.7
2273 Male, age 74, both hemispheres 54.7
2825 Male, age 18, unknown 48.3
2224 Female, age 72, unknown 43.8
Red nucleus
nTPM: 72.9
2785 Male, age 18, unknown 108.6
2588 Male, age 74, left hemisphere 84.9
2769 Male, age 72, unknown 79.6
2227 Male, age 72, unknown 77.9
2584 Male, age 75, left hemisphere 77.3
1904 Male, age 53, unknown 70.2
2503 Female, age 72, unknown 70.0
2823 Male, age 76, right hemisphere 67.3
1954 Female, age 42, unknown 64.7
1865 Male, age 51, unknown 61.4
1821 Female, age 72, unknown 59.1
2725 Female, age 75, unknown 53.3
Substantia nigra
nTPM: 64.1
1889 Female, age 72, unknown 80.9
1941 Male, age 53, unknown 80.0
1916 Female, age 42, unknown 78.7
2665 Male, age 74, both hemispheres 71.1
2583 Male, age 75, right hemisphere 69.6
1851 Male, age 51, unknown 66.3
2590 Female, age 75, unknown 61.6
2699 Male, age 18, unknown 46.0
2409 Female, age 72, unknown 44.6
2241 Male, age 72, unknown 42.0
Superior colliculus
nTPM: 73.4
2668 Female, age 75, unknown 94.2
2261 Male, age 18, unknown 85.5
2087 Female, age 72, unknown 79.5
1796 Male, age 53, unknown 76.6
2664 Male, age 75, both hemispheres 74.8
1913 Female, age 42, unknown 70.3
1895 Male, age 76, right hemisphere 69.0
1995 Male, age 72, unknown 65.2
1839 Male, age 51, unknown 59.9
2587 Male, age 74, left hemisphere 58.6
Ventral tegmental area
nTPM: 60.6
1942 Male, age 51, unknown 69.5
2218 Male, age 76, both hemispheres 64.9
1915 Female, age 42, unknown 64.2
2410 Female, age 72, unknown 61.0
2223 Female, age 72, unknown 54.1
2021 Male, age 53, unknown 49.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.9
Samples: 139

Max nTPM: 25.0
Min nTPM: 6.0
Std nTPM: 4.1
Median nTPM: 12.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 23.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 21.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 21.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 21.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 20.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 20.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 20.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.4
FF:10158-103A5 76 years, female 45.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.7
Sample A Female 11.9
Sample B Female 9.7
Sample C Male 12.7
Sample D Male 12.6
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 9.8
Sample A Female 10.7
Sample B Female 9.8
Sample C Male 16.7
Sample D Male 15.2
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.7
Min nTPM: 10.2
Sample B Female 10.2
Sample C Male 11.7
Sample D Male 10.3
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.6
Sample A Female 13.7
Sample B Female 11.6
Sample C Male 16.1
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.8
Sample A Male 14.1
Sample B Male 12.8
Sample C Female 13.7
Sample D Female 12.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
69290746 Antisense, RP_050407_04_F05, Mouse strain C57BL/6J (56 days, male) 6.5
71161477 Antisense, RP_050810_01_D09, Mouse strain C57BL/6J (56 days, male) 0.0

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