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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:212.9 nTPM
HPA:110.1 nTPM
GTEx:212.9 nTPM
FANTOM5:316.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045446
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.1
overview
Male, age 65
Small intestine sample 232
nTPM: 133
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 107.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 91.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 107.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 212.9
Samples: 187

Max nTPM: 416.7
Min nTPM: 121.9
Std nTPM: 39.2
Median nTPM: 206.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 416.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 329.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 302.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 294.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 289.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 286.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 285.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 284.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 283.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 282.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 281.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 279.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 275.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 273.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 271.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 270.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 270.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 269.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 268.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 265.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 265.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 263.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 262.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 261.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 261.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 259.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 257.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 256.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 255.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 254.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 252.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 252.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 252.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 252.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 248.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 247.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 245.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 244.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 243.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 242.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 238.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 238.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 236.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 235.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 233.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 233.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 232.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 231.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 231.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 229.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 229.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 228.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 228.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 228.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 227.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 225.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 225.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 224.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 224.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 223.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 223.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 223.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 222.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 222.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 221.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 219.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 219.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 218.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 218.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 216.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 216.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 215.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 215.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 214.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 213.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 213.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 213.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 213.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 213.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 212.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 212.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 212.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 212.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 212.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 209.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 209.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 209.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 208.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 208.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 208.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 207.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 207.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 206.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 206.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 206.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 206.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 205.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 205.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 204.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 204.5
GTEX-1192X-2526-SM-59868 50-59 years, male 203.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 203.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 203.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 201.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 201.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 200.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 200.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 199.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 199.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 199.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 199.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 198.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 198.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 198.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 198.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 198.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 198.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 198.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 196.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 196.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 196.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 196.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 196.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 195.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 195.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 195.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 195.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 194.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 193.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 193.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 193.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 193.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 192.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 191.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 191.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 191.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 190.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 190.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 188.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 187.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 186.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 186.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 185.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 185.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 184.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 183.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 183.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 182.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 180.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 180.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 180.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 180.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 180.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 179.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 179.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 178.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 178.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 178.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 177.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 176.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 175.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 175.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 174.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 173.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 173.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 172.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 171.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 171.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 170.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 170.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 169.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 168.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 168.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 165.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 164.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 164.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 164.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 162.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 161.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 157.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 154.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 153.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 144.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 141.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 137.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 129.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 121.9
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

316.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 316.7
FF:10024-101D6 15,40,85 years, mixed 316.7

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