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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:421.5 nTPM
HPA Brain:285.7 nTPM
GTEx:421.5 nTPM
FANTOM5:244.3 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.7
Sample id Sample description nTPM
Amygdala
nTPM: 285.7
2814 Male, age 76, right hemisphere 314.7
2695 Female, age 67, right hemisphere 288.5
2514 Male, age 75, right hemisphere 284.3
2517 Female, age 94, left hemisphere 275.8
1987 Female, age 91, left hemisphere 265.2
Basal amygdala
nTPM: 251.8
2609 Male, age 75, right hemisphere 275.4
2110 Male, age 80, left hemisphere 268.2
2243 Female, age 91, right hemisphere 267.4
2827 Female, age 67, right hemisphere 263.9
1955 Male, age 76, both hemispheres 244.0
2685 Female, age 94, left hemisphere 192.1
Central amygdala
nTPM: 282.1
2826 Female, age 94, left hemisphere 307.4
1905 Male, age 76, both hemispheres 294.6
2239 Male, age 80, left hemisphere 291.4
2515 Male, age 75, right hemisphere 270.0
2701 Female, age 91, right hemisphere 247.0
Corticomedial amygdala
nTPM: 252.9
2535 Female, age 67, right hemisphere 327.2
2242 Female, age 91, right hemisphere 269.6
2829 Male, age 80, left hemisphere 240.3
2240 Male, age 76, both hemispheres 238.5
2428 Male, age 75, right hemisphere 224.1
2429 Female, age 94, left hemisphere 217.8
Lateral amygdala
nTPM: 269.5
1883 Male, age 76, both hemispheres 293.3
2516 Male, age 75, right hemisphere 289.7
2534 Female, age 94, left hemisphere 281.3
2830 Female, age 67, right hemisphere 260.4
2255 Female, age 91, right hemisphere 253.3
2256 Male, age 80, left hemisphere 238.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

421.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 421.5
Samples: 152

Max nTPM: 812.6
Min nTPM: 237.2
Std nTPM: 92.9
Median nTPM: 407.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 812.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 799.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 732.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 687.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 680.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 648.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 627.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 618.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 599.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 585.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 581.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 554.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 551.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 526.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 522.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 521.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 517.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 516.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 515.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 502.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 496.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 491.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 491.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 488.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 486.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 486.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 484.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 483.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 479.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 478.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 463.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 461.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 459.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 458.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 458.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 457.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 454.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 454.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 451.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 449.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 448.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 447.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 444.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 443.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 441.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 440.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 438.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 436.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 436.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 433.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 433.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 432.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 432.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 431.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 431.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 430.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 429.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 429.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 428.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 427.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 427.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 424.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 420.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 418.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 417.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 417.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 415.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 413.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 413.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 412.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 412.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 412.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 410.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 407.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 407.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 407.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 406.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 404.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 403.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 402.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 400.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 400.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 399.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 396.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 396.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 396.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 396.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 395.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 394.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 394.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 393.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 392.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 392.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 390.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 389.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 386.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 386.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 385.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 384.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 380.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 377.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 375.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 371.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 371.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 371.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 371.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 371.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 369.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 365.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 364.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 364.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 363.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 363.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 360.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 360.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 358.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 356.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 356.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 353.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 352.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 352.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 350.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 349.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 348.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 347.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 347.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 344.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 341.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 340.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 340.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 340.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 340.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 339.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 337.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 336.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 335.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 335.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 333.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 333.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 332.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 330.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 330.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 328.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 325.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 324.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 309.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 305.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 288.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 283.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 263.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 261.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 237.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

244.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 244.3
FF:10151-102I7 76 years, female 244.3

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