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EDC3
HPA
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  • EDC3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

EDC3
Synonyms FLJ21128, hYjeF_N2-15q23, LSM16, YJDC, YJEFN2
Gene descriptioni

Full gene name according to HGNC.

Enhancer of mRNA decapping 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q24.1
Chromosome location (bp) 74630558 - 74696292
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

15
Ensembl ENSG00000179151 (version 109)
Entrez gene 80153
HGNC HGNC:26114
UniProt Q96F86 (UniProt - Evidence at protein level)
neXtProt NX_Q96F86
GeneCards EDC3
Antibodypedia EDC3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Binds single-stranded RNA. Involved in the process of mRNA degradation and in the positive regulation of mRNA decapping. May play a role in spermiogenesis and oogenesis.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

RNA-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that is important in mRNA degradation. The encoded protein is a component of a decapping complex that promotes efficient removal of the monomethylguanosine (m7G) cap from mRNAs, as part of the 5' to 3' mRNA decay pathway. Mutations in this gene have been identified in human patients with an autosomal recessive form of intellectual disability. [provided by RefSeq, May 2017]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
EDC3-201
ENSP00000320503
ENST00000315127
Q96F86
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [P-body]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0016020 [membrane]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
GO:0033962 [P-body assembly]
GO:0036464 [cytoplasmic ribonucleoprotein granule]
GO:0042802 [identical protein binding]
Show all
508 aa
56.1 kDa
No 0
EDC3-202
ENSP00000401343
ENST00000426797
Q96F86
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [P-body]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0016020 [membrane]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
GO:0033962 [P-body assembly]
GO:0036464 [cytoplasmic ribonucleoprotein granule]
GO:0042802 [identical protein binding]
Show all
508 aa
56.1 kDa
No 0
EDC3-204
ENSP00000455393
ENST00000562174
H3BPN4
[Direct mapping] YjeF domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0036464 [cytoplasmic ribonucleoprotein granule]
Show all
213 aa
23.3 kDa
No 0
EDC3-205
ENSP00000457128
ENST00000562974
H3BTD6
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
68 aa
7.8 kDa
No 0
EDC3-206
ENSP00000455503
ENST00000563009
H3BPW9
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
Show all
253 aa
28 kDa
No 0
EDC3-207
ENSP00000454317
ENST00000563292
H3BMB8
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
Show all
92 aa
9.8 kDa
No 0
EDC3-209
ENSP00000455682
ENST00000566119
H3BQA1
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
31 aa
3.2 kDa
No 0
EDC3-210
ENSP00000456805
ENST00000566219
H3BSQ0
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0036464 [cytoplasmic ribonucleoprotein granule]
Show all
163 aa
18.5 kDa
No 0
EDC3-211
ENSP00000457523
ENST00000566243
H3BU87
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
Show all
131 aa
13.8 kDa
No 0
EDC3-212
ENSP00000455870
ENST00000566828
H3BQP5
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
Show all
123 aa
13 kDa
No 0
EDC3-213
ENSP00000457156
ENST00000567813
H3BTF8
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
Show all
54 aa
5.8 kDa
No 0
EDC3-214
ENSP00000455580
ENST00000568176
Q96F86
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [P-body]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0016020 [membrane]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
GO:0033962 [P-body assembly]
GO:0036464 [cytoplasmic ribonucleoprotein granule]
GO:0042802 [identical protein binding]
Show all
508 aa
56.1 kDa
No 0
EDC3-216
ENSP00000455589
ENST00000569561
H3BQ37
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
Show all
177 aa
19.2 kDa
No 0
EDC3-218
ENSP00000457170
ENST00000570138
H3BTH0
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003729 [mRNA binding]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
Show all
101 aa
10.6 kDa
No 0
EDC3-219
ENSP00000497737
ENST00000647659
Q96F86
[Direct mapping] Enhancer of mRNA-decapping protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Other diseases
   Mental and behavioural disorders
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [P-body]
GO:0003723 [RNA binding]
GO:0003729 [mRNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0016020 [membrane]
GO:0031087 [deadenylation-independent decapping of nuclear-transcribed mRNA]
GO:0033962 [P-body assembly]
GO:0036464 [cytoplasmic ribonucleoprotein granule]
GO:0042802 [identical protein binding]
Show all
508 aa
56.1 kDa
No 0

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