MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:159.6 nTPM
HPA Brain:295.7 nTPM
GTEx:159.6 nTPM
FANTOM5:500.9 Scaled Tags Per Million
Pig:375.9 nTPM
Mouse:226.0 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 295.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 224.6
2019 Male, age 18, unknown 285.1
2411 Female, age 72, unknown 250.5
1870 Female, age 42, unknown 242.4
1827 Male, age 72, unknown 232.8
1833 Male, age 53, unknown 232.6
2828 Female, age 72, unknown 232.3
1830 Male, age 51, unknown 226.2
2666 Male, age 74, left hemisphere 200.3
2219 Male, age 76, both hemispheres 188.8
2586 Male, age 75, left hemisphere 154.7
Dorsal raphe nucleus
nTPM: 263.0
2298 Female, age 72, unknown 329.1
2016 Female, age 72, unknown 269.0
1828 Male, age 53, unknown 258.6
2750 Male, age 76, both hemispheres 245.1
2047 Male, age 72, unknown 213.2
Inferior colliculus
nTPM: 214.4
2097 Female, age 72, unknown 238.1
1848 Female, age 42, unknown 207.4
1890 Male, age 53, unknown 206.3
2849 Male, age 72, unknown 205.8
Median raphe nucleus
nTPM: 273.8
2220 Male, age 76, midline 273.8
Periaquaductal grey, anterior
nTPM: 261.6
2502 Female, age 75, unknown 267.0
1947 Male, age 18, unknown 262.7
1795 Male, age 51, unknown 255.1
Periaquaductal grey, dorsal
nTPM: 258.2
2850 Male, age 76, both hemispheres 360.3
1831 Male, age 72, unknown 229.8
1840 Male, age 53, unknown 221.3
2464 Female, age 72, unknown 221.3
Periaquaductal grey, lateral
nTPM: 295.7
2272 Male, age 74, both hemispheres 350.7
2140 Male, age 76, both hemispheres 319.4
2053 Male, age 18, unknown 216.9
Pretectal area
nTPM: 257.8
2273 Male, age 74, both hemispheres 372.4
1817 Female, age 42, unknown 279.5
1815 Male, age 53, unknown 269.4
2224 Female, age 72, unknown 266.2
2667 Female, age 75, unknown 263.4
2007 Male, age 72, unknown 258.8
1816 Male, age 51, unknown 240.2
1944 Female, age 72, unknown 229.1
2825 Male, age 18, unknown 225.3
2407 Male, age 75, both hemispheres 223.2
2316 Male, age 76, right hemisphere 208.6
Red nucleus
nTPM: 233.9
2725 Female, age 75, unknown 274.3
1904 Male, age 53, unknown 255.6
2785 Male, age 18, unknown 252.7
1954 Female, age 42, unknown 250.2
1821 Female, age 72, unknown 250.0
2503 Female, age 72, unknown 249.7
1865 Male, age 51, unknown 244.1
2227 Male, age 72, unknown 233.6
2769 Male, age 72, unknown 226.7
2823 Male, age 76, right hemisphere 203.1
2588 Male, age 74, left hemisphere 187.2
2584 Male, age 75, left hemisphere 179.6
Substantia nigra
nTPM: 223.4
1916 Female, age 42, unknown 279.1
2241 Male, age 72, unknown 243.6
1851 Male, age 51, unknown 242.7
1889 Female, age 72, unknown 238.1
1941 Male, age 53, unknown 236.1
2409 Female, age 72, unknown 216.7
2699 Male, age 18, unknown 207.7
2665 Male, age 74, both hemispheres 200.9
2590 Female, age 75, unknown 195.0
2583 Male, age 75, right hemisphere 174.3
Superior colliculus
nTPM: 225.5
1995 Male, age 72, unknown 269.7
1913 Female, age 42, unknown 256.5
2261 Male, age 18, unknown 255.2
2587 Male, age 74, left hemisphere 245.2
2087 Female, age 72, unknown 241.6
1796 Male, age 53, unknown 227.1
1839 Male, age 51, unknown 217.5
2668 Female, age 75, unknown 202.9
1895 Male, age 76, right hemisphere 179.9
2664 Male, age 75, both hemispheres 159.3
Ventral tegmental area
nTPM: 238.8
1915 Female, age 42, unknown 261.9
2223 Female, age 72, unknown 251.9
2218 Male, age 76, both hemispheres 243.8
2410 Female, age 72, unknown 235.4
1942 Male, age 51, unknown 225.9
2021 Male, age 53, unknown 213.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 159.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.6
Samples: 139

Max nTPM: 419.1
Min nTPM: 71.3
Std nTPM: 59.7
Median nTPM: 143.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 419.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 379.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 356.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 352.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 336.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 304.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 297.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 274.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 263.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 242.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 240.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 500.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 500.9
FF:10158-103A5 76 years, female 500.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 375.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 321.8
Samples: 4

Max nTPM: 357.7
Min nTPM: 293.9
Sample A Female 357.7
Sample B Female 293.9
Sample C Male 302.3
Sample D Male 333.2
Midbrain
nTPM: 347.0
Samples: 4

Max nTPM: 450.0
Min nTPM: 279.1
Sample A Female 450.0
Sample B Female 279.1
Sample C Male 367.5
Sample D Male 291.4
Periaqueductal gray
nTPM: 296.9
Samples: 3

Max nTPM: 303.7
Min nTPM: 287.8
Sample B Female 287.8
Sample C Male 299.3
Sample D Male 303.7
Superior colliculi
nTPM: 375.9
Samples: 4

Max nTPM: 447.6
Min nTPM: 333.3
Sample A Female 380.4
Sample B Female 447.6
Sample C Male 342.2
Sample D Male 333.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 226.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 226.0
Samples: 4

Max nTPM: 245.5
Min nTPM: 205.9
Sample A Male 205.9
Sample B Male 208.2
Sample C Female 245.5
Sample D Female 244.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
67978478 Antisense, RP_040923_01_C03, Mouse strain C57BL/6J (56 days, male) 20.2

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