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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:151.3 nTPM
FANTOM5:584.4 Scaled Tags Per Million
Pig:253.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002242Antibody CAB001513Antibody CAB019952Antibody CAB080301
Glial cells Not detectedLowMediumMedium
Neuronal cells LowLowMediumHigh









CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 151.3
Samples: 246

Max nTPM: 415.6
Min nTPM: 65.3
Std nTPM: 49.4
Median nTPM: 137.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 415.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 359.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 349.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 311.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 301.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 299.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 288.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 284.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 277.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 270.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 269.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 264.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 259.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 247.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 246.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 238.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 238.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 235.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 233.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 232.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 227.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 224.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 220.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 211.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 211.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 209.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 207.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 205.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 203.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 203.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 199.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 197.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 192.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 191.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 190.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 189.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 188.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 188.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 181.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 181.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 180.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 180.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 180.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 175.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 173.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 173.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 173.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 172.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 171.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 170.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 170.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 168.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 168.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 168.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 168.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 167.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 167.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 167.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 166.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 165.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 165.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 165.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 164.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 164.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 163.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 163.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 161.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 161.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 160.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 160.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 160.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 160.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 159.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 159.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 159.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 159.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 157.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 157.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 157.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 155.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 155.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 154.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 154.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 153.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 153.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 153.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 152.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 152.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 151.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 150.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 150.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 149.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 149.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 149.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 149.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 149.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 148.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 148.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 147.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 147.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 147.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 147.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 146.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 145.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 145.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 145.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 144.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 143.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 142.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 142.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 142.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 142.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 142.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 142.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 141.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 141.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 140.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 140.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 139.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 139.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 138.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 138.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 137.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 137.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 137.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 137.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 137.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 136.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 136.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 136.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 136.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 136.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 136.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 135.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 135.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 135.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 134.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 134.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 134.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 134.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 134.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 134.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 133.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 132.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 132.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 132.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 131.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 131.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 131.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 131.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 131.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 131.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 130.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 130.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 129.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 129.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 129.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 129.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 129.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 129.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 129.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 129.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 128.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 128.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 128.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 127.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 127.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 127.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 126.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 126.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 126.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 126.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 125.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 125.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 125.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 125.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 125.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 124.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 124.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 123.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 123.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 123.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 122.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 122.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 122.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 121.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 121.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 121.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 121.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 120.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 119.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 119.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 119.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 119.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 119.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 118.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 117.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 117.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 117.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 116.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 116.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 116.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 116.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 116.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 115.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 115.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 115.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 114.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 114.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 114.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 113.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 113.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 112.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 111.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 110.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 110.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 109.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 109.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 108.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 106.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 106.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 105.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 105.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 105.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 103.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 103.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 102.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 101.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 100.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 98.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 97.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 96.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 96.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 94.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 94.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 93.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 93.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 93.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 93.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 93.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 90.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 75.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 69.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 65.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

584.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 584.4
FF:10164-103B2 76 years, female 584.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.1
Pig sample Sample description nTPM
Caudate
nTPM: 253.1
Samples: 4

Max nTPM: 280.8
Min nTPM: 224.6
Sample A Female 224.6
Sample B Female 246.6
Sample C Male 280.8
Sample D Male 260.3

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