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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:118.6 nTPM
HPA Brain:139.6 nTPM
GTEx:118.6 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:49.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 116.9
1981 Female, age 72, midline 141.5
2194 Female, age 79, both hemispheres 123.8
2816 Male, age 47, midline 119.1
2565 Male, age 75, midline 106.3
2048 Male, age 55, midline 93.8
Cervical spinal cord, dorsal horn
nTPM: 139.6
2296 Male, age 66, both hemispheres 224.5
2173 Female, age 72, unknown 174.2
2069 Male, age 47, both hemispheres 143.4
1877 Male, age 55, unknown 122.9
2297 Male, age 75, both hemispheres 86.9
2721 Male, age 90, both hemispheres 85.4
Cervical spinal cord, ventral horn
nTPM: 134.1
2068 Male, age 55, unknown 159.4
2809 Male, age 90, both hemispheres 158.6
2098 Female, age 72, unknown 131.7
2480 Male, age 75, both hemispheres 128.8
2820 Female, age 79, both hemispheres 117.3
2295 Male, age 66, both hemispheres 108.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 118.6
Samples: 159

Max nTPM: 300.4
Min nTPM: 34.4
Std nTPM: 47.4
Median nTPM: 109.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 300.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 267.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 258.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 247.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 234.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 234.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 220.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 204.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 202.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 198.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 197.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 192.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 192.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 191.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 188.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 178.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 177.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 173.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 166.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 165.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 165.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 164.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 164.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 164.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 163.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 163.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 162.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 161.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 158.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 158.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 157.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 156.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 156.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 154.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 153.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 153.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 152.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 148.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 146.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 145.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 144.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 144.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 141.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 140.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 140.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 139.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 138.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 135.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 132.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 131.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 131.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 131.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 130.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 130.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 130.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 125.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 124.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 123.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 122.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 120.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 120.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 120.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 118.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 117.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 117.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 116.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 116.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 115.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 114.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 113.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 113.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 113.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 112.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 112.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 112.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 110.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 109.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 109.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 109.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 109.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 108.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 108.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 107.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 107.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 107.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 107.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 107.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 106.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 105.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 105.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 105.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 104.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 104.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 103.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 102.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 102.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 102.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 101.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 98.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 98.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 97.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 97.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 95.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 93.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 92.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 92.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 91.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 91.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 90.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 88.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 86.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 84.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 84.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 84.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 83.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 82.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 82.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 82.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 81.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 81.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 80.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 79.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 78.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 78.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 77.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 76.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 76.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 75.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 74.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 73.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 73.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 72.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 71.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 71.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 71.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 68.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 68.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 67.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 67.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 67.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 67.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 64.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 64.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 64.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 60.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 58.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 57.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 54.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 52.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 51.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 51.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 48.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 46.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 35.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 34.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 71.0
FF:10181-103D1 60 years, female 100.1
FF:10159-103A6 76 years, female 42.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 49.6
Samples: 4

Max nTPM: 61.0
Min nTPM: 37.2
Sample A Female 37.2
Sample B Female 54.4
Sample C Male 61.0
Sample D Male 45.6
Ventral spinal cord
nTPM: 40.0
Samples: 4

Max nTPM: 43.3
Min nTPM: 37.7
Sample A Female 40.2
Sample B Female 38.7
Sample C Male 37.7
Sample D Male 43.3

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