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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

91.298
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:229.3 nTPM
FANTOM5:134.3 Scaled Tags Per Million
Pig:53.9 nTPM
Allen mouse:0.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA024797
Medulla oblongata mean intensity 91.298
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 62.736
Raphe magnus nucleus 9.021
Cochlear nucleus 13.271
Lateral paragigantocellular nucleus 25.793
Raphe pallidus nucleus 69.626
Facial nucleus 40.592
Hypoglossal nucleus 23.983
Ambiguus nucleus 36.495
External cuneate nucleus 38.323
Inferior olivary nucleus 29.380
Raphe obscures nucleus 41.445
Dorsal motor nucleus of vagus 34.086

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.3
Sample id Sample description nTPM
Area postrema
nTPM: 229.3
2799 Male, age 61, both hemispheres 357.8
2306 Male, age 80, both hemispheres 191.1
2054 Male, age 76, both hemispheres 139.0
Dorsal medullary reticular nucleus
nTPM: 74.3
2373 Male, age 61, both hemispheres 84.5
2088 Male, age 76, both hemispheres 83.5
2040 Female, age 85, both hemispheres 54.9
Dorsal motor vagal complex
nTPM: 145.8
2797 Male, age 61, both hemispheres 240.3
2643 Male, age 74, both hemispheres 204.6
2185 Male, age 76, both hemispheres 183.1
2844 Male, age 55, unknown 134.0
2813 Female, age 72, unknown 118.0
2807 Female, age 85, both hemispheres 117.7
2000 Male, age 74, unknown 95.2
2133 Female, age 91, both hemispheres 73.8
Gigantocellular reticular nuclei, medullary
nTPM: 68.6
2314 Male, age 61, both hemispheres 98.8
2022 Male, age 76, right hemisphere 80.4
2387 Female, age 91, both hemispheres 65.2
2462 Male, age 74, both hemispheres 59.5
1876 Female, age 85, both hemispheres 58.0
2310 Male, age 80, both hemispheres 49.6
Gigantocellular reticular nuclei, pars
nTPM: 64.8
2336 Male, age 61, both hemispheres 69.6
2330 Male, age 80, both hemispheres 66.8
2706 Male, age 80, both hemispheres 64.8
2168 Male, age 76, both hemispheres 62.1
2084 Female, age 85, both hemispheres 60.9
Inferior olive
nTPM: 122.9
2379 Male, age 80, both hemispheres 149.9
2178 Male, age 61, both hemispheres 126.0
2085 Female, age 85, both hemispheres 121.2
2563 Male, age 74, both hemispheres 114.7
2628 Female, age 91, both hemispheres 102.8
Lateral medullary reticular nucleus
nTPM: 94.5
2852 Male, age 80, both hemispheres 120.5
2804 Female, age 91, both hemispheres 117.3
2374 Male, age 61, both hemispheres 95.4
2190 Female, age 85, both hemispheres 91.9
2044 Male, age 76, both hemispheres 75.8
2305 Male, age 74, both hemispheres 66.2
Medial olivary nucleus
nTPM: 101.6
2138 Female, age 91, both hemispheres 138.8
1943 Male, age 61, both hemispheres 101.5
2851 Male, age 80, both hemispheres 90.7
1962 Male, age 76, both hemispheres 75.6
Medial vestibular nucleus
nTPM: 66.6
2134 Male, age 76, both hemispheres 90.1
2743 Female, age 85, both hemispheres 80.3
2624 Male, age 61, both hemispheres 74.9
2093 Male, age 80, both hemispheres 54.5
2801 Male, age 74, both hemispheres 50.6
2803 Female, age 91, both hemispheres 49.4
Motor hypoglossal nucleus
nTPM: 72.5
2277 Male, age 76, both hemispheres 110.0
2461 Male, age 61, both hemispheres 80.7
2182 Male, age 80, both hemispheres 69.7
2125 Female, age 91, both hemispheres 63.7
2132 Female, age 85, both hemispheres 38.4
Nucleus ambiguus
nTPM: 85.7
2071 Male, age 76, both hemispheres 116.3
2096 Female, age 85, both hemispheres 55.2
Nucleus cuneatus
nTPM: 109.1
2564 Male, age 74, both hemispheres 131.8
2380 Male, age 80, both hemispheres 127.0
2562 Male, age 61, both hemispheres 122.9
2808 Female, age 85, both hemispheres 116.1
2805 Female, age 91, both hemispheres 115.5
2100 Male, age 76, both hemispheres 111.5
2376 Male, age 61, both hemispheres 92.6
2131 Male, age 76, both hemispheres 90.6
2381 Male, age 80, both hemispheres 73.9
Nucleus gracilis
nTPM: 121.7
2627 Male, age 74, both hemispheres 132.4
2299 Female, age 85, both hemispheres 132.2
2382 Male, age 80, both hemispheres 100.6
Nucleus raphe obscurus
nTPM: 77.3
2142 Male, age 76, midline 99.5
2800 Male, age 61, midline 76.2
2845 Female, age 85, midline 56.3
Nucleus raphe pallidus
nTPM: 82.5
1924 Male, age 61, midline 107.4
2145 Male, age 76, midline 73.7
2183 Male, age 80, midline 66.3
Nucleus tractus solitarii
nTPM: 112.9
2191 Female, age 85, both hemispheres 128.3
2307 Male, age 80, both hemispheres 127.4
2144 Female, age 91, right hemisphere 102.3
2656 Male, age 76, both hemispheres 93.8
Parvicellular reticular nuclei
nTPM: 63.5
2095 Male, age 76, both hemispheres 74.0
2119 Male, age 80, both hemispheres 71.2
2558 Male, age 74, both hemispheres 45.2
Parvicellular reticular nuclei, medullary
nTPM: 69.0
2181 Male, age 80, left hemisphere 81.0
2091 Female, age 85, both hemispheres 63.4
2189 Female, age 91, both hemispheres 62.7
Peritrigeminal nucleus
nTPM: 95.9
2067 Female, age 85, both hemispheres 117.3
2136 Male, age 76, both hemispheres 94.4
2179 Male, age 61, both hemispheres 76.0
Prepositus hypoglossal nucleus
nTPM: 91.6
2086 Male, age 80, both hemispheres 120.2
2855 Female, age 85, right hemisphere 63.0
Spinal trigeminal nucleus, caudal
nTPM: 83.4
2447 Male, age 76, both hemispheres 99.6
2308 Male, age 80, both hemispheres 96.4
2642 Male, age 74, both hemispheres 81.9
2312 Male, age 61, both hemispheres 80.9
2390 Female, age 91, both hemispheres 58.2
Spinal trigeminal nucleus, interpolar
nTPM: 65.6
2625 Male, age 61, both hemispheres 72.5
2033 Male, age 80, both hemispheres 66.3
2066 Male, age 76, right hemisphere 65.6
2389 Female, age 91, both hemispheres 62.4
2386 Female, age 85, both hemispheres 61.2
Spinal vestibular nucleus
nTPM: 65.1
2796 Male, age 61, both hemispheres 77.7
2748 Male, age 76, both hemispheres 76.4
2780 Male, age 80, both hemispheres 67.1
2806 Female, age 85, both hemispheres 58.5
2384 Male, age 74, both hemispheres 57.6
2186 Female, age 91, both hemispheres 53.4
Superior vestibular nucleus
nTPM: 99.0
2061 Male, age 76, both hemispheres 122.5
2015 Male, age 80, both hemispheres 91.2
2383 Male, age 74, both hemispheres 83.4
Ventral medullary reticular nucleus
nTPM: 86.9
2372 Male, age 61, both hemispheres 102.5
2060 Male, age 76, both hemispheres 71.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 82.9
2302 Female, age 91, both hemispheres 101.1
2180 Male, age 61, both hemispheres 84.5
1986 Male, age 76, both hemispheres 81.7
2741 Female, age 85, both hemispheres 77.7
2118 Male, age 80, both hemispheres 69.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 134.3
FF:10174-103C3 60 years, female 178.8
FF:10155-103A2 76 years, female 114.8
FF:10038-101F2 18-64 years, mixed 109.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 53.9
Samples: 4

Max nTPM: 68.6
Min nTPM: 47.8
Sample A Female 48.4
Sample B Female 47.8
Sample C Male 50.8
Sample D Male 68.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.2
71723875 Antisense, RP_050921_01_A11, Mouse strain C57BL/6J (56 days, male) 0.2

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