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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:61.9 nTPM
HPA:48.2 nTPM
GTEx:61.9 nTPM
FANTOM5:298.8 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.2
overview
Male, age 65
Small intestine sample 232
nTPM: 25.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 45.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 68.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 53.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 61.9
Samples: 187

Max nTPM: 384.8
Min nTPM: 13.8
Std nTPM: 58.1
Median nTPM: 40.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 384.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 319.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 293.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 225.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 222.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 222.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 218.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 205.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 202.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 195.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 190.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 189.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 184.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 178.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 176.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 148.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 142.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 130.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 129.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 128.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 127.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 124.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 123.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 112.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 106.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 106.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 102.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 100.9
GTEX-1192X-2526-SM-59868 50-59 years, male 99.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 99.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 95.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 94.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 91.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 91.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 88.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 87.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 79.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 78.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 77.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 76.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 75.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 74.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 70.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 69.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 68.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 68.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 67.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 67.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 67.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 66.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 63.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 61.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 59.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 59.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 59.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 58.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 57.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 57.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 55.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 55.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 53.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 51.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 50.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 50.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 50.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 49.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 49.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 49.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 49.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 48.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 48.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 48.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 47.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 47.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 46.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 46.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 46.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 45.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 44.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 44.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 43.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 43.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 43.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 42.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 42.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 42.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 42.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 42.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 42.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 41.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 41.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 41.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 40.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 40.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 40.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 40.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 39.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 39.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 39.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 38.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 38.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 38.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 38.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 38.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 37.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 37.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 37.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 37.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 37.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 36.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 36.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 35.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 35.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 35.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 35.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 35.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 34.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 33.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 33.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 33.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 33.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 32.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 32.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 32.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 32.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 32.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 31.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 31.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 31.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 30.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 30.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 30.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 29.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 29.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 29.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 29.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 29.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 29.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 29.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 29.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 29.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 28.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 28.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 28.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 28.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 28.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 27.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 26.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 26.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 26.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 26.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 25.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 25.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 25.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 25.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 25.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 25.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 25.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 24.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 24.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 24.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 24.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 24.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 23.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 23.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 23.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 23.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 23.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 23.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 22.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 22.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 21.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 21.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 21.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 21.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 20.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 20.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 20.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 20.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 20.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 20.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 19.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 19.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 18.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 16.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 16.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 13.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

298.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 298.8
FF:10024-101D6 15,40,85 years, mixed 298.8

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