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PDXDC1
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PDXDC1
Synonyms KIAA0251
Gene descriptioni

Full gene name according to HGNC.

Pyridoxal dependent decarboxylase domain containing 1
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 16
Cytoband p13.11
Chromosome location (bp) 14974591 - 15139339
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000179889 (version 109)
Entrez gene 23042
HGNC HGNC:28995
UniProt Q6P996 (UniProt - Evidence at protein level)
neXtProt NX_Q6P996
GeneCards PDXDC1
Antibodypedia PDXDC1 antibodies


PROTEIN FUNCTION
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Decarboxylase, Lyase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Pyridoxal phosphate
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables cadherin binding activity. Predicted to be involved in carboxylic acid metabolic process. Located in Golgi apparatus. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PDXDC1-201
ENSP00000379691
ENST00000396410
Q6P996
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0016831 [carboxy-lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
Show all
788 aa
86.7 kDa
No 0
PDXDC1-202
ENSP00000391147
ENST00000450288
Q6P996
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0016831 [carboxy-lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
Show all
697 aa
76.5 kDa
No 0
PDXDC1-203
ENSP00000406703
ENST00000455313
Q6P996
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0016831 [carboxy-lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
Show all
429 aa
47.7 kDa
No 0
PDXDC1-204
ENSP00000437835
ENST00000535621
Q86XE2
[Direct mapping] PDXDC1 protein; Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
498 aa
55 kDa
No 0
PDXDC1-207
ENSP00000457417
ENST00000563522
H3BU11
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005794 [Golgi apparatus]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
120 aa
13.5 kDa
No 0
PDXDC1-208
ENSP00000455613
ENST00000563667
H3BQ54
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005794 [Golgi apparatus]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
185 aa
20.4 kDa
No 0
PDXDC1-209
ENSP00000454791
ENST00000563679
H3BND4
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
806 aa
88.8 kDa
No 0
PDXDC1-212
ENSP00000455914
ENST00000566426
H3BQS3
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
24 aa
2.8 kDa
No 0
PDXDC1-214
ENSP00000454910
ENST00000567306
H3BNL6
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
271 aa
30 kDa
No 0
PDXDC1-215
ENSP00000455070
ENST00000569715
Q6P996
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0016831 [carboxy-lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
Show all
761 aa
83.7 kDa
No 0
PDXDC1-217
ENSP00000486662
ENST00000627450
Q6P996
[Direct mapping] Pyridoxal-dependent decarboxylase domain-containing protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003824 [catalytic activity]
GO:0005794 [Golgi apparatus]
GO:0016829 [lyase activity]
GO:0016830 [carbon-carbon lyase activity]
GO:0016831 [carboxy-lyase activity]
GO:0019752 [carboxylic acid metabolic process]
GO:0030170 [pyridoxal phosphate binding]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045296 [cadherin binding]
Show all
760 aa
83.6 kDa
No 0

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