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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:28.5 nTPM
HPA Brain:7.9 nTPM
GTEx:28.5 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:20.4 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.9
Sample id Sample description nTPM
Amygdala
nTPM: 7.9
2814 Male, age 76, right hemisphere 11.6
2514 Male, age 75, right hemisphere 9.4
1987 Female, age 91, left hemisphere 8.9
2695 Female, age 67, right hemisphere 5.2
2517 Female, age 94, left hemisphere 4.4
Basal amygdala
nTPM: 3.8
1955 Male, age 76, both hemispheres 5.7
2110 Male, age 80, left hemisphere 5.4
2609 Male, age 75, right hemisphere 4.3
2243 Female, age 91, right hemisphere 3.8
2685 Female, age 94, left hemisphere 3.1
2827 Female, age 67, right hemisphere 0.7
Central amygdala
nTPM: 5.6
1905 Male, age 76, both hemispheres 10.9
2826 Female, age 94, left hemisphere 5.9
2515 Male, age 75, right hemisphere 4.5
2239 Male, age 80, left hemisphere 4.1
2701 Female, age 91, right hemisphere 2.5
Corticomedial amygdala
nTPM: 5.7
2829 Male, age 80, left hemisphere 8.6
2428 Male, age 75, right hemisphere 7.9
2429 Female, age 94, left hemisphere 7.6
2240 Male, age 76, both hemispheres 6.8
2242 Female, age 91, right hemisphere 2.1
2535 Female, age 67, right hemisphere 1.1
Lateral amygdala
nTPM: 4.9
1883 Male, age 76, both hemispheres 9.2
2516 Male, age 75, right hemisphere 7.7
2534 Female, age 94, left hemisphere 4.3
2256 Male, age 80, left hemisphere 3.9
2830 Female, age 67, right hemisphere 2.3
2255 Female, age 91, right hemisphere 2.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 28.5
Samples: 152

Max nTPM: 57.2
Min nTPM: 14.6
Std nTPM: 6.3
Median nTPM: 27.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 57.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 49.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 48.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 47.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 45.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 43.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 42.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 41.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 40.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 40.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 39.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 37.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 36.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 36.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 36.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 35.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 35.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 34.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 34.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 34.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 33.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 33.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 33.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 32.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 32.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 32.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 32.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 32.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 32.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 32.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 32.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 32.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 32.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 31.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 31.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 31.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 30.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 30.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 30.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 30.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 30.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 30.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 30.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 30.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 29.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 29.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 29.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 29.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 29.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 29.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 29.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 29.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 28.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 28.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 28.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 28.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 28.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 28.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 28.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 28.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 27.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 27.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 27.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 27.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 27.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 27.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 27.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 27.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 27.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 27.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 27.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 27.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 27.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 27.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 26.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 26.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 26.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 26.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 26.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 26.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 26.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 26.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 26.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 26.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 26.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 26.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 26.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 26.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 26.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 26.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 26.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 26.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 25.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 25.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 25.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 25.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 25.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 25.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 25.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 25.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 25.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 25.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 25.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 25.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 24.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 24.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 24.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 24.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 24.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 24.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 24.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 24.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 24.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 24.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 24.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 24.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 24.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 24.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 24.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 23.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 23.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 23.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 23.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 23.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 23.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 23.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 22.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 22.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 22.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 22.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 22.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 22.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 22.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 22.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 22.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 21.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 21.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 21.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 21.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 20.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 20.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 20.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 20.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 16.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 16.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.9
FF:10151-102I7 76 years, female 29.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.8
Pig sample Sample description nTPM
Amygdala
nTPM: 18.8
Samples: 4

Max nTPM: 26.0
Min nTPM: 14.7
Sample A Female 26.0
Sample B Female 14.7
Sample C Male 15.4
Sample D Male 19.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 20.4
Samples: 4

Max nTPM: 22.4
Min nTPM: 19.3
Sample A Male 22.4
Sample B Male 19.3
Sample C Female 19.8
Sample D Female 20.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
564761 Antisense, RP_040826_01_D06, Mouse strain C57BL/6J (56 days, male) 0.3

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