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FGD6
HPA
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  • FGD6
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

FGD6
Synonyms FLJ11183, ZFYVE24
Gene descriptioni

Full gene name according to HGNC.

FYVE, RhoGEF and PH domain containing 6
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q22
Chromosome location (bp) 95076749 - 95217482
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000180263 (version 109)
Entrez gene 55785
HGNC HGNC:21740
UniProt Q6ZV73 (UniProt - Evidence at protein level)
neXtProt NX_Q6ZV73
GeneCards FGD6
Antibodypedia FGD6 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Guanine-nucleotide releasing factor
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in several processes, including filopodium assembly; regulation of GTPase activity; and regulation of cell shape. Predicted to be located in Golgi apparatus; lamellipodium; and ruffle. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
FGD6-201
ENSP00000344446
ENST00000343958
Q6ZV73
[Direct mapping] FYVE, RhoGEF and PH domain-containing protein 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001726 [ruffle]
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005856 [cytoskeleton]
GO:0007010 [cytoskeleton organization]
GO:0008360 [regulation of cell shape]
GO:0030027 [lamellipodium]
GO:0030036 [actin cytoskeleton organization]
GO:0031267 [small GTPase binding]
GO:0043087 [regulation of GTPase activity]
GO:0046847 [filopodium assembly]
GO:0046872 [metal ion binding]
Show all
1430 aa
160.8 kDa
No 0
FGD6-203
ENSP00000450342
ENST00000546711
Q6ZV73
[Direct mapping] FYVE, RhoGEF and PH domain-containing protein 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001726 [ruffle]
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005856 [cytoskeleton]
GO:0007010 [cytoskeleton organization]
GO:0008360 [regulation of cell shape]
GO:0030027 [lamellipodium]
GO:0030036 [actin cytoskeleton organization]
GO:0031267 [small GTPase binding]
GO:0043087 [regulation of GTPase activity]
GO:0046847 [filopodium assembly]
GO:0046872 [metal ion binding]
Show all
1374 aa
154.5 kDa
No 0
FGD6-204
ENSP00000448350
ENST00000548069
H0YI21
[Direct mapping] FYVE, RhoGEF and PH domain-containing protein 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
133 aa
14.8 kDa
No 0
FGD6-205
ENSP00000449005
ENST00000549499
F8VY01
[Direct mapping] FYVE, RhoGEF and PH domain-containing protein 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0043087 [regulation of GTPase activity]
Show all
1206 aa
135.5 kDa
No 0
FGD6-207
ENSP00000450240
ENST00000551521
F8VQX5
[Direct mapping] FYVE, RhoGEF and PH domain-containing protein 6
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005737 [cytoplasm]
GO:0043087 [regulation of GTPase activity]
GO:0046872 [metal ion binding]
Show all
279 aa
32.1 kDa
No 0

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